Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G64300 573 / 0 Protein kinase family protein (.1.2) AT5G41730 556 / 0 Protein kinase family protein (.1) AT1G01450 392 / 2e-129 Protein kinase superfamily protein (.1) AT1G62400 95 / 5e-21 HT1 high leaf temperature 1, Protein kinase superfamily protein (.1) AT3G46930 96 / 1e-20 Protein kinase superfamily protein (.1) AT1G14000 94 / 3e-20 VIK VH1-interacting kinase (.1) AT5G58950 92 / 3e-19 Protein kinase superfamily protein (.1) AT5G01850 89 / 6e-19 Protein kinase superfamily protein (.1) AT2G17700 91 / 9e-19 STY8 serine/threonine/tyrosine kinase 8, ACT-like protein tyrosine kinase family protein (.1) AT4G31170 88 / 2e-18 Protein kinase superfamily protein (.1.2.3.4)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10036439 [exp] 1311 / 0 AT1G64300 599 / 0.0 Protein kinase family protein (.1.2) Lus10033941 [exp] 559 / 0 AT1G64300 796 / 0.0 Protein kinase family protein (.1.2) Lus10041113 [exp] 481 / 7e-167 AT1G01450 187 / 8e-56 Protein kinase superfamily protein (.1) Lus10032357 [exp] 401 / 1e-131 AT1G64300 581 / 0.0 Protein kinase family protein (.1.2) Lus10032356 [exp] 182 / 5e-53 AT1G64300 268 / 4e-86 Protein kinase family protein (.1.2) Lus10022653 [exp] 98 / 4e-21 AT4G38470 673 / 0.0 serine/threonine/tyrosine kinase 46, ACT-like protein tyrosine kinase family protein (.1) Lus10023989 [exp] 98 / 5e-21 AT4G38470 771 / 0.0 serine/threonine/tyrosine kinase 46, ACT-like protein tyrosine kinase family protein (.1) Lus10025092 [exp] 98 / 1e-20 AT1G78610 779 / 0.0 mechanosensitive channel of small conductance-like 6 (.1) Lus10012517 [exp] 97 / 1e-20 AT4G35780 754 / 0.0 serine/threonine/tyrosine kinase 17, ACT-like protein tyrosine kinase family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G095200 [exp] 706 / 0 AT1G64300 749 / 0.0 Protein kinase family protein (.1.2) Potri.003G137000 [exp] 540 / 0 AT1G64300 781 / 0.0 Protein kinase family protein (.1.2) Potri.010G164500 [exp] 97 / 3e-21 AT1G14000 757 / 0.0 VH1-interacting kinase (.1) Potri.007G060600 [exp] 98 / 4e-21 AT4G35780 793 / 0.0 serine/threonine/tyrosine kinase 17, ACT-like protein tyrosine kinase family protein (.1) Potri.004G179100 [exp] 96 / 1e-20 AT4G35780 612 / 0.0 serine/threonine/tyrosine kinase 17, ACT-like protein tyrosine kinase family protein (.1) Potri.005G106200 [exp] 95 / 4e-20 AT4G35780 821 / 0.0 serine/threonine/tyrosine kinase 17, ACT-like protein tyrosine kinase family protein (.1) Potri.006G279900 [exp] 93 / 6e-20 AT2G24360 642 / 0.0 Protein kinase superfamily protein (.1) Potri.018G001800 [exp] 93 / 7e-20 AT2G24360 663 / 0.0 Protein kinase superfamily protein (.1) Potri.004G179457 [exp] 93 / 8e-20 AT4G38470 654 / 0.0 serine/threonine/tyrosine kinase 46, ACT-like protein tyrosine kinase family protein (.1) Potri.004G179514 [exp] 93 / 2e-19 AT4G38470 786 / 0.0 serine/threonine/tyrosine kinase 46, ACT-like protein tyrosine kinase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [flax] [poplar] PKinase PF07714 [flax] [poplar] PK_Tyr_Ser-Thr Protein tyrosine and serine/threonine kinase CL0016 [flax] [poplar] PF06760 [flax] [poplar] DUF1221 Protein of unknown function (DUF1221)
Representative CDS sequence Show only first row Show all	>Lus10041114 pacid=23179610 polypeptide=Lus10041114 locus=Lus10041114.g ID=Lus10041114.BGIv1.0 annot-version=v1.0 ATGGAGCAATTCAGGAGAATGGGGGAGCAGCTCGGCGGCCTGAAGGCATTAATGGTGTTCCGGGACAACATCGAGGTCAATCCGAGGCAATGCAAGCTGT TGCTAGATATCTGCAGCGCTGCATACGACGTGATCGCGGATCAAATCTTACAGAGTTTGAAATTCGAGGAGCGGCATCTGAAATGGCGAGTCCTCGAGCA GCCATTGATAGAGATTTGCAGGATTTTCAAGGAAGTGGAAGGTTACATCAGACAGTGCCTCGAGACGACGACGTCGTTTTGGGCGAAAGCCATTGTGTTC CATCATAATCGAGACTCGGTGGAGTTTCTCGTCCACGGCCTGATCTACACGATGCCTGCCGTGATCGAAGCTATTGAGATTGCGGGGGAGTTTGCGGGGA ATGATCGGGAGGAGATTCGGATGAAGAGGGTGATCGTGTCGAATAAGTACCACAAGCAATGGATTGGCGACCGGAAGATGTTCGAGATGAAGTATTCGAG GCAGTATTTGGTTTCAAAAGATTTAGTCGCTCGGTTCGAGTCTGCTTGGTTGGAAGACAGGTGGATCCTGACGAATAGACTCAGGGTTTCGAACTCCACG AAGCAGGAACGGAAGCTGGCCGATTTTATGGCAAAGAGGATCGAAGGGAATTTGAAATTTTTACTTCCATGTTCGGTCCTGGTTGGTTCCAGAGATTATC AAGTGAGGCGGAGGCTTGGCGGAGGGAGCCAATTGAAGGAGATCCAATGGCTAGGAGGAGAGAGCTTTGCCGTGAGGCATTTCTTCGGAAACATCGAGCC GATGATTCCTGAGATTGTTCAGCTTTCGTCGCTCTGCCATCCGAATGTTCTGCAATTGCTCTGTGGATTCACTGATGAAGACAAGAAAGAGTGTTTTTTG GTATCAGAACTGATGAGTTGTAGAGACATTGGAAGCTACATTAAGGAAGCTTGCGGGTCAAAAAACAGCAGGAGGCTACCATTTTCGCTCCCTGTTGCCG TCGATTTGATGCTTCAGATCGCACGGGGAATGGAGTATCTTTTTTCCAGAAAGGTTTACCATGGAAATTTGAATCCTTCCAATATTTTGATCAGGCCGGG CGCTTCGGGCTCGAGTTTACTTGTTAAAGTGTCAGGATTCGGCTTGTCTTCGTTGCGGAATACGAACAACAACAACGTAGGGAATTCGTCGTCCTCATGT ACTTCTTTGCCTTTCATCTGGACCGCTCCAGAAATTCTGGAAGATACGACAGACGATCGTATGTTAACGGAGAAGTCGGATGTGTACAGCTACGCGATGG TATGTTTTGAAATCCTGACAGGAAAAGTCCCATTTGAAGACAGTCATCTCCAGGGAGACAGGATGGCCCGCAATATTCTAGCAGGGGAACGGCCGTTGTT TCCATCTCATAAACCGAAATTCGTGGCCAATTTCACGAAAAGATGCTGGCATCCTGACCCAAATTCCCGCCCAGGATTTTCGACCATCTGCAGGGTCCTT CGATACGCGAAGAAGTTCCTCCTTCTCACGAATCTTCCAAACAGTCAGGACACCACTCCCATGGTCGCGCCCCTGCTGGATTACTTGGAGATGGATTCCA AGCTTCGCCGGAGATTCCAGTCCTGGGAGAATCCTGACACCTCCGCTGTGTCGGAGGTGTCGTTTCAAATGTTTGCTTACAAGGTAATGGAGATGGAGAG GATGTCGTCGGCGGGGAAGGACTTTACCACTTCGGAATCGTCAGGAAGCGACCTGAGCGGAGATGAAGCTGCATTTGTGGACGTGATGGATCCGTTCAGG AGTCCTGACAGGAATAGTAGTAGTGCTAGTAGCAGTACCCATAATATGGTACGTTTGTCCTCGTCCCCTGAAGCGACAATGACCGCATCGCCGCCGGTTC TTAAGAGGTCGTCAACGGTTGGTTCCAAGAGAGCGACGTTTGATCCATGGAAGACCTCCCCCAAACATCCAGGGACACCGAGAGGAAGAGCAACGAGGCC GCCGCCGCTGGGACAATGTGTTGGAGGAGGGAGGAGCATGAGAATGAATTCAGAGAGTCAGTTGATGAACATGGCAAGTCCCAAGGTCACAAGGAGAACT ACAACCGGCCATGCTTCCGATTCTGAGCTTTGA
AA sequence Show only first row Show all	>Lus10041114 pacid=23179610 polypeptide=Lus10041114 locus=Lus10041114.g ID=Lus10041114.BGIv1.0 annot-version=v1.0 MEQFRRMGEQLGGLKALMVFRDNIEVNPRQCKLLLDICSAAYDVIADQILQSLKFEERHLKWRVLEQPLIEICRIFKEVEGYIRQCLETTTSFWAKAIVF HHNRDSVEFLVHGLIYTMPAVIEAIEIAGEFAGNDREEIRMKRVIVSNKYHKQWIGDRKMFEMKYSRQYLVSKDLVARFESAWLEDRWILTNRLRVSNST KQERKLADFMAKRIEGNLKFLLPCSVLVGSRDYQVRRRLGGGSQLKEIQWLGGESFAVRHFFGNIEPMIPEIVQLSSLCHPNVLQLLCGFTDEDKKECFL VSELMSCRDIGSYIKEACGSKNSRRLPFSLPVAVDLMLQIARGMEYLFSRKVYHGNLNPSNILIRPGASGSSLLVKVSGFGLSSLRNTNNNNVGNSSSSC TSLPFIWTAPEILEDTTDDRMLTEKSDVYSYAMVCFEILTGKVPFEDSHLQGDRMARNILAGERPLFPSHKPKFVANFTKRCWHPDPNSRPGFSTICRVL RYAKKFLLLTNLPNSQDTTPMVAPLLDYLEMDSKLRRRFQSWENPDTSAVSEVSFQMFAYKVMEMERMSSAGKDFTTSESSGSDLSGDEAAFVDVMDPFR SPDRNSSSASSSTHNMVRLSSSPEATMTASPPVLKRSSTVGSKRATFDPWKTSPKHPGTPRGRATRPPPLGQCVGGGRSMRMNSESQLMNMASPKVTRRT TTGHASDSEL

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G64300			Protein kinase family protein ...		Lus10041114 [exp]	0	1
AT1G64300			Protein kinase family protein ...		Lus10036439 [exp]	1.0	0.8550
AT3G48240			Octicosapeptide/Phox/Bem1p fam...		Lus10043341 [exp]	7.1	0.7425
AT3G20530			Protein kinase superfamily pro...		Lus10040050 [exp]	17.6	0.7194
AT5G56460			Protein kinase superfamily pro...		Lus10013406 [exp]	21.2	0.7600
AT2G28250		NCRK	Protein kinase superfamily pro...		Lus10021460 [exp]	26.6	0.7233
AT1G09580			emp24/gp25L/p24 family/GOLD fa...		Lus10001615 [exp]	30.5	0.6936
AT2G30690			Protein of unknown function, D...		Lus10014743 [exp]	34.3	0.6889
AT5G59310		LTP4	lipid transfer protein 4 (.1)		Lus10022745 [exp]	43.1	0.6119
AT3G24715			Protein kinase superfamily pro...		Lus10038160 [exp]	43.2	0.7035
AT3G48190		PIG1, ATATM, AT...	pcd in male gametogenesis 1, A...		Lus10043340 [exp]	44.4	0.6856

Compare expression of checked genes

Lus10041114 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.