Plant FIBer expression Database

Lus10041115 [FLAX]


External link
JGI Phytozome v13
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT1G60460 232 / 7e-72 unknown protein
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10036440
[exp]
619 / 0 AT1G60460 267 / 2e-85 unknown protein
Poplar homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.010G041900
[exp]
281 / 9e-91 AT1G60460 362 / 6e-121 unknown protein
PFAM info
Representative CDS sequence
>Lus10041115 pacid=23179558 polypeptide=Lus10041115 locus=Lus10041115.g ID=Lus10041115.BGIv1.0 annot-version=v1.0
ATGGCAGCATCTTCGTCTCTGAAGCTCTGTTCTGAAATATGCAATTGTCAAGTGAATTTGCTGGAACACAGACCTGACAAGAAGCTCAAACACCTTCCAT
CAAACCTAAAGAATGGAGTCAAGTTCAGGCACGGAATTGGTACTGAAGTCTGTCTGTCGATTTTCGAGAGCATGGACGTTCTAGTTTCAGAGCTGAATTC
CTTTCTCCAGAAGATGCTCGTTCTGCAGATACCTAATATCGCATCAGAGCTTGTGGTTGAACAAGAAGGCGTTCATGGATCGCCATCTACTTATGTCTAT
CCAGCTGTTGAGGAAAGTGTTCTTAGTTCTAGCTCAAGTATTAAACATCTGCAGTCAGGTCTCGAGGAATATGTCTTGAAGCATGGAAACAATTCACTTC
AAAAGGAATATCTCAAGGTTGGAGCTGCCTCCTGTAGCTCTGAAAGTCGGAAAAATTCTGGACTAGTAATTGAAGCTGTAGTTATTGTAAGCGAGGCAGA
GACAGCTCGTCCATCTAGTACGTGCAGCTCAGAGACACAGGTGCTGTATTACGAGAATTTTAAACCTTCATCATTGGCTAGATCAACACTAACTGCCTTG
TCGAGCATTGATTGGAAAAGCTACGGATTGACTCTGCGGAATGCTACCGATCAAGATGGCTGCTTACTTCACTGGGATAACTTACAGTCTAACCATACAG
AACTGTCACCAAGGCGTAAAACCCAACCTGACAAAAACGTCGTAAAGAAGGCCGTTATACTTGCAATGGATGATTTGAAGGACAGGAATCCAGGACTACT
TCTTAGCCAGCGCAGCACCAAGATACGCAGTTATGCCCCCGATCTCGCGAGATCGATTGCCGGCCTCATTACGACATCAATCGATCAAGATTTTCGAGAG
GAGTGCTTCTCTCTTCTAGGCTTGCAGTCTGAGGACGTCGGAACAGCTGAAGATTGTATCAGGAAGAAGATCGTTTCGGTTATAGAAGTGAACGACCGGA
ATCCCTCGAAAAGCTGCAAGGATGTGGCGGCTGCTACTTCCCTGTTCGGAGATGACTCGCACCGTGAAGGAGGAAGAGGTAATGTTGCGTTTATGCTCGA
AGATGATTTGTTTCAGAGTTCTTACCTTCAGGAAGATGAATATGAAGTAGGAGAGGGTGAAGATGGAGAGGATTATGGTGAAATGGATTTGACGAGTTGA
AA sequence
>Lus10041115 pacid=23179558 polypeptide=Lus10041115 locus=Lus10041115.g ID=Lus10041115.BGIv1.0 annot-version=v1.0
MAASSSLKLCSEICNCQVNLLEHRPDKKLKHLPSNLKNGVKFRHGIGTEVCLSIFESMDVLVSELNSFLQKMLVLQIPNIASELVVEQEGVHGSPSTYVY
PAVEESVLSSSSSIKHLQSGLEEYVLKHGNNSLQKEYLKVGAASCSSESRKNSGLVIEAVVIVSEAETARPSSTCSSETQVLYYENFKPSSLARSTLTAL
SSIDWKSYGLTLRNATDQDGCLLHWDNLQSNHTELSPRRKTQPDKNVVKKAVILAMDDLKDRNPGLLLSQRSTKIRSYAPDLARSIAGLITTSIDQDFRE
ECFSLLGLQSEDVGTAEDCIRKKIVSVIEVNDRNPSKSCKDVAAATSLFGDDSHREGGRGNVAFMLEDDLFQSSYLQEDEYEVGEGEDGEDYGEMDLTS

DESeq2's median of ratios [FLAX]

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Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol HYPR_s2_CTRR_s2_FoxR_s4_CTRR_s4_FoxR_r1_CTRR_r1_FoxR_r3_CTRR_r3_FoxR_r1s2_CTRR_r1s2_FoxR_r3s2_CTRR_r3s2_FoxR_s6_CTRR_s6_Al4R_s6_Al12R_s6_Al24R_s8_CTRR_s8_Al4R_s8_Al12R_s8_Al24R_r5_CTRR_r5_Al4R_r5_Al12R_r5_Al24R_r7_CTRR_r7_Al4R_r7_Al12R_r7_Al24LEAF_NLEAF_PLEAF_NPKSAMAR_BetAR_rdfcPARTOP_BetTOP_rdfiFIBaiFIBbMID_BetMID_rdftFIBatFIB_GrtFIB_LitFIB_BitFIBbtFIBb_PUL8tFIBb_PUL24tFIBb_PUL96tFIBb_OPP8tFIBb_OPP24tFIBb_OPP96sXYLasXYLbsXYLb_PUL8sXYLb_PUL24sXYLb_PUL96sXYLb_OPP8sXYLb_OPP24sXYLb_OPP96
AT1G60460 unknown protein Lus10041115
[exp]
0 1
AT1G58520 RXW8 lipases;hydrolases, acting on ... Lus10032801
[exp]
9.5 0.7665
AT3G07400 lipase class 3 family protein ... Lus10009590
[exp]
10.1 0.7751
AT5G17230 PSY PHYTOENE SYNTHASE (.1.2.3) Lus10001416
[exp]
12.0 0.7753
AT5G42560 Abscisic acid-responsive (TB2/... Lus10033152
[exp]
17.2 0.7686
AT2G24370 Protein kinase protein with ad... Lus10026989
[exp]
25.7 0.7734
AT3G05630 PLDP2, PDLZ2, P... PHOSPHOLIPASE D ZETA 2, phosph... Lus10020672
[exp]
25.8 0.7428
AT3G59110 Protein kinase superfamily pro... Lus10001423
[exp]
31.3 0.7686
AT1G29120 Hydrolase-like protein family ... Lus10013909
[exp]
38.8 0.7262
AT1G24120 ARL1 ARG1-like 1 (.1) Lus10029202
[exp]
44.6 0.7442
AT1G29690 CAD1 constitutively activated cell ... Lus10025153
[exp]
45.2 0.7551

Lus10041115 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.