Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G09630 380 / 4e-136 ATRAB-A2A, ATRAB11C, ATRABA2A ARABIDOPSIS RAB GTPASE A2A, RAB GTPase 11C (.1) AT1G07410 321 / 9e-113 ATRAB-A2B, AtRABA2b ARABIDOPSIS RAB GTPASE HOMOLOG A2B, RAB GTPase homolog A2B (.1) AT3G46830 320 / 4e-112 ATRAB-A2C, AtRab11A, AtRABA2c ARABIDOPSIS RAB GTPASE HOMOLOG A2C, RAB GTPase homolog A2C (.1) AT5G59150 312 / 4e-109 ATRAB-A2D, AtRABA2d ARABIDOPSIS RAB GTPASE HOMOLOG A2D, RAB GTPase homolog A2D (.1) AT5G60860 302 / 4e-105 AtRABA1f RAB GTPase homolog A1F (.1) AT3G15060 296 / 7e-103 AtRABA1g RAB GTPase homolog A1G (.1) AT1G16920 290 / 1e-100 ATRABA4B, RAB11, ATRABA1B RAB GTPase homolog A1B (.1) AT4G18800 290 / 1e-100 AthSGBP, AtRab11B, AtRABA1d RAB GTPase homolog A1D (.1) AT5G45750 290 / 1e-100 AtRABA1c RAB GTPase homolog A1C (.1) AT4G18430 290 / 3e-100 AtRABA1e RAB GTPase homolog A1E (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10036441 [exp] 379 / 2e-135 AT1G09630 387 / 2e-138 ARABIDOPSIS RAB GTPASE A2A, RAB GTPase 11C (.1) Lus10016486 [exp] 322 / 3e-113 AT1G07410 396 / 1e-142 ARABIDOPSIS RAB GTPASE HOMOLOG A2B, RAB GTPase homolog A2B (.1) Lus10040745 [exp] 321 / 9e-113 AT1G07410 394 / 7e-142 ARABIDOPSIS RAB GTPASE HOMOLOG A2B, RAB GTPase homolog A2B (.1) Lus10001026 [exp] 315 / 3e-110 AT1G07410 366 / 2e-130 ARABIDOPSIS RAB GTPASE HOMOLOG A2B, RAB GTPase homolog A2B (.1) Lus10040255 [exp] 314 / 6e-110 AT1G07410 363 / 2e-129 ARABIDOPSIS RAB GTPASE HOMOLOG A2B, RAB GTPase homolog A2B (.1) Lus10004687 [exp] 313 / 1e-109 AT1G07410 363 / 2e-129 ARABIDOPSIS RAB GTPASE HOMOLOG A2B, RAB GTPase homolog A2B (.1) Lus10015297 [exp] 302 / 4e-105 AT5G60860 428 / 6e-155 RAB GTPase homolog A1F (.1) Lus10002178 [exp] 300 / 4e-104 AT5G60860 423 / 4e-153 RAB GTPase homolog A1F (.1) Lus10017679 [exp] 298 / 9e-104 AT5G60860 426 / 4e-154 RAB GTPase homolog A1F (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G004100 [exp] 368 / 3e-131 AT1G09630 382 / 6e-137 ARABIDOPSIS RAB GTPASE A2A, RAB GTPase 11C (.1) Potri.006G000300 [exp] 327 / 4e-115 AT1G07410 400 / 4e-144 ARABIDOPSIS RAB GTPASE HOMOLOG A2B, RAB GTPase homolog A2B (.1) Potri.016G000400 [exp] 323 / 2e-113 AT1G07410 380 / 4e-136 ARABIDOPSIS RAB GTPASE HOMOLOG A2B, RAB GTPase homolog A2B (.1) Potri.010G197200 [exp] 320 / 2e-112 AT1G07410 370 / 3e-132 ARABIDOPSIS RAB GTPASE HOMOLOG A2B, RAB GTPase homolog A2B (.1) Potri.008G061300 [exp] 315 / 3e-110 AT1G07410 367 / 9e-131 ARABIDOPSIS RAB GTPASE HOMOLOG A2B, RAB GTPase homolog A2B (.1) Potri.004G226400 [exp] 310 / 2e-108 AT1G09630 331 / 7e-117 ARABIDOPSIS RAB GTPASE A2A, RAB GTPase 11C (.1) Potri.011G061300 [exp] 303 / 2e-105 AT5G60860 416 / 5e-150 RAB GTPase homolog A1F (.1) Potri.011G070300 [exp] 298 / 1e-103 AT5G45750 392 / 1e-140 RAB GTPase homolog A1C (.1) Potri.019G092500 [exp] 295 / 2e-102 AT5G60860 419 / 2e-151 RAB GTPase homolog A1F (.1) Potri.001G374000 [exp] 294 / 6e-102 AT5G60860 417 / 1e-150 RAB GTPase homolog A1F (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0023 [flax] [poplar] P-loop_NTPase PF00071 [flax] [poplar] Ras Ras family
Representative CDS sequence Show only first row Show all	>Lus10041116 pacid=23179768 polypeptide=Lus10041116 locus=Lus10041116.g ID=Lus10041116.BGIv1.0 annot-version=v1.0 ATGTCGAGGAGGCCGGACGAAGAGTACGACTACCTGTTCAAGGTCGTCTTAATCGGCGATTCCGGCGTCGGAAAATCCAACCTCCTCTCTCGCTTCACTC GTAACGAGTTCTGCTTAGAGTCCAAGTCCACAATCGGCGTCGAATTCGCTACCCGCACCCTCCAAGTGGAAGGAAGGGTGGTGAAAGCTCAGATATGGGA CACAGCAGGCCAGGAAAGGTACAGAGCCATAACCAGCGCCTACTACAGGGGCGCCCTGGGAGCGCTACTCGTATACGACGTTACAAAGCCAACAACGTTC GAGAACGTTAGCCGGTGGCTCAAGGAGCTGAGGGACCACGCGGATGCCAACATTGTGGTGATGCTAATTGGGAACAAGACCGATCTGAAGCATCTGAGAG GCGTTGCCACCGAGGATGCTCAGGGCTATGCAGAGAAAGAAGGGTTGTCGTTCATCGAGACGTCTGCACTCGAGGCGCTGAATGTGGAGAAGGCTTTCCA GACTATATTGTCAGAGATTTACCGTATAATAAGCAAGAAGAATCTGTCGTCGTCGGGAGAGGGAGGGGATTCGGGGAGTGTGAAAGAAGGGAAGACCATT GTTGTGGGAGAGTCTGAGGGGGTGAATGCAAAGAAACCTTGTTGTAGTTCATCTTAG
AA sequence Show only first row Show all	>Lus10041116 pacid=23179768 polypeptide=Lus10041116 locus=Lus10041116.g ID=Lus10041116.BGIv1.0 annot-version=v1.0 MSRRPDEEYDYLFKVVLIGDSGVGKSNLLSRFTRNEFCLESKSTIGVEFATRTLQVEGRVVKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTF ENVSRWLKELRDHADANIVVMLIGNKTDLKHLRGVATEDAQGYAEKEGLSFIETSALEALNVEKAFQTILSEIYRIISKKNLSSSGEGGDSGSVKEGKTI VVGESEGVNAKKPCCSSS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G09630		ATRAB-A2A, ATRA...	ARABIDOPSIS RAB GTPASE A2A, RA...		Lus10041116 [exp]	0	1
AT5G59950			RNA-binding (RRM/RBD/RNP motif...		Lus10005445 [exp]	7.6	0.8423
AT5G52840			NADH-ubiquinone oxidoreductase...		Lus10039296 [exp]	8.8	0.8508
AT5G07960			unknown protein		Lus10034695 [exp]	14.7	0.8207
AT1G27435			unknown protein		Lus10032003 [exp]	15.0	0.8366
AT2G30410		TFCA, KIS	TUBULIN FOLDING FACTOR A, tubu...		Lus10031896 [exp]	18.6	0.8141
AT1G34350			unknown protein		Lus10017068 [exp]	19.5	0.8346
AT1G20580			Small nuclear ribonucleoprotei...		Lus10016013 [exp]	20.4	0.8305
AT3G52730			ubiquinol-cytochrome C reducta...		Lus10014198 [exp]	30.2	0.8220
AT1G26340		B5 #6, B5#6, AT...	ARABIDOPSIS CYTOCHROME B5 ISOF...		Lus10036973 [exp]	37.5	0.8239
AT3G17210		ATHS1	A. THALIANA HEAT STABLE PROTEI...		Lus10037823 [exp]	37.7	0.8034

Compare expression of checked genes

Lus10041116 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.