Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G11730 302 / 3e-104 ATFP8, AtRABD1 ARABIDOPSIS THALIANA RAB GTPASE HOMOLOG D1, Ras-related small GTP-binding family protein (.1) AT4G17530 278 / 9e-95 RAB1C, AtRab1C, AtRABD2c RAB GTPase homolog 1C (.1) AT1G02130 275 / 1e-93 ARA5, AtRABD2a, AtRab1B, Ara-5 ARABIDOPSIS THALIANA RAB D2A, ARABIDOPSIS THALIANA RESPONSIVE TO ABSCISIC ACID 1B, ARABIDOPSIS RAS 5, RAS 5 (.1) AT5G47200 273 / 5e-93 AtRABD2b, AtRab1A ARABIDOPSIS RAB GTPASE HOMOLOG D2B, RAB GTPase homolog 1A (.1) AT3G46060 199 / 2e-63 ARA3, Ara-3, AtRABE1c, AtRab8A RAB GTPase homolog 8A (.1.2.3) AT5G59840 199 / 2e-63 Ras-related small GTP-binding family protein (.1) AT3G53610 195 / 6e-62 ATRAB8, AtRab8B, AtRABE1a RAB GTPase homolog 8 (.1.2.3) AT3G09900 188 / 2e-59 AtRABE1e, AtRab8E RAB GTPase homolog E1E (.1) AT5G03520 185 / 6e-58 ATRAB-E1D, AtRab8C, AtRABE1d ARABIDOPSIS RAB HOMOLOG E1D, RAB GTPase homolog 8C (.1.2) AT3G07410 154 / 4e-46 AtRABA5b RAB GTPase homolog A5B (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10036442 [exp] 356 / 3e-125 AT3G11730 350 / 2e-124 ARABIDOPSIS THALIANA RAB GTPASE HOMOLOG D1, Ras-related small GTP-binding family protein (.1) Lus10010999 [exp] 273 / 1e-92 AT5G47200 387 / 3e-139 ARABIDOPSIS RAB GTPASE HOMOLOG D2B, RAB GTPase homolog 1A (.1) Lus10000595 [exp] 271 / 6e-92 AT5G47200 387 / 3e-139 ARABIDOPSIS RAB GTPASE HOMOLOG D2B, RAB GTPase homolog 1A (.1) Lus10037608 [exp] 228 / 2e-75 AT1G02130 255 / 1e-87 ARABIDOPSIS THALIANA RAB D2A, ARABIDOPSIS THALIANA RESPONSIVE TO ABSCISIC ACID 1B, ARABIDOPSIS RAS 5, RAS 5 (.1) Lus10007698 [exp] 196 / 1e-62 AT3G46060 378 / 1e-135 RAB GTPase homolog 8A (.1.2.3) Lus10024423 [exp] 196 / 2e-62 AT3G46060 376 / 7e-135 RAB GTPase homolog 8A (.1.2.3) Lus10023430 [exp] 196 / 4e-62 AT3G46060 364 / 3e-129 RAB GTPase homolog 8A (.1.2.3) Lus10025309 [exp] 195 / 5e-62 AT3G46060 374 / 1e-133 RAB GTPase homolog 8A (.1.2.3) Lus10005890 [exp] 194 / 9e-62 AT3G46060 396 / 2e-142 RAB GTPase homolog 8A (.1.2.3)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G226600 [exp] 345 / 3e-121 AT3G11730 364 / 4e-130 ARABIDOPSIS THALIANA RAB GTPASE HOMOLOG D1, Ras-related small GTP-binding family protein (.1) Potri.003G004000 [exp] 337 / 3e-118 AT3G11730 359 / 2e-128 ARABIDOPSIS THALIANA RAB GTPASE HOMOLOG D1, Ras-related small GTP-binding family protein (.1) Potri.003G081800 [exp] 278 / 6e-95 AT1G02130 391 / 9e-141 ARABIDOPSIS THALIANA RAB D2A, ARABIDOPSIS THALIANA RESPONSIVE TO ABSCISIC ACID 1B, ARABIDOPSIS RAS 5, RAS 5 (.1) Potri.002G138400 [exp] 278 / 7e-95 AT1G02130 393 / 1e-141 ARABIDOPSIS THALIANA RAB D2A, ARABIDOPSIS THALIANA RESPONSIVE TO ABSCISIC ACID 1B, ARABIDOPSIS RAS 5, RAS 5 (.1) Potri.001G080400 [exp] 278 / 1e-94 AT1G02130 387 / 2e-139 ARABIDOPSIS THALIANA RAB D2A, ARABIDOPSIS THALIANA RESPONSIVE TO ABSCISIC ACID 1B, ARABIDOPSIS RAS 5, RAS 5 (.1) Potri.014G049400 [exp] 275 / 1e-93 AT1G02130 390 / 2e-140 ARABIDOPSIS THALIANA RAB D2A, ARABIDOPSIS THALIANA RESPONSIVE TO ABSCISIC ACID 1B, ARABIDOPSIS RAS 5, RAS 5 (.1) Potri.001G152800 [exp] 270 / 1e-91 AT1G02130 382 / 2e-137 ARABIDOPSIS THALIANA RAB D2A, ARABIDOPSIS THALIANA RESPONSIVE TO ABSCISIC ACID 1B, ARABIDOPSIS RAS 5, RAS 5 (.1) Potri.009G027900 [exp] 201 / 2e-64 AT3G46060 341 / 8e-121 RAB GTPase homolog 8A (.1.2.3) Potri.001G236100 [exp] 197 / 8e-63 AT5G59840 333 / 1e-117 Ras-related small GTP-binding family protein (.1) Potri.010G208900 [exp] 197 / 1e-62 AT3G46060 349 / 5e-124 RAB GTPase homolog 8A (.1.2.3)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0023 [flax] [poplar] P-loop_NTPase PF00071 [flax] [poplar] Ras Ras family
Representative CDS sequence Show only first row Show all	>Lus10041117 pacid=23179689 polypeptide=Lus10041117 locus=Lus10041117.g ID=Lus10041117.BGIv1.0 annot-version=v1.0 ATGACTACTTTAAGACAAAGAAAGTGGTGGACTGGTGGGAGGAAAGCTCTTACTCTGCAGCCAGTTCCCGCTGCTTTGCTTTCTCAAAGAGGAAAGGAAC TCAATTCCCTTCCATCTCCAGACGGAATTCATTCATTGAGAGCAAGAAACCCTATCATCTTCAATCATGGGCACCGAATACGACTATCTCTTCAAGCTTC TGCTAATCGGCGACTCCTCCGTTGGAAAATCTTGCCTGCTGCTCCGATTTGCTGTAATTTTGACTTTCTGTTGACCCCGCTCTTCTTTCTCGTGTCTGAT GAGTTTGGATTTAATCATCTAGGGTTTCCATTTTTGATTTTGCAGGATGATTCGTACGTTGACAGCTACATCAGTACTATAGGAGTTGATTTCAAAATCA GAACTGTGGAGCTGGATGGAAAGACGGTCAAGCTTCAGATCTGGGATACTGCTGGTCAGGAGCGCTTTAGAACAATAACAAGCAGTTATTACCGAGGGGC ACATGGAATCATCATTGTCTATGATGTTACTGACATGGACAGCTTCAACAATGTCAAACAATGGTTAAATGAGATTGACCGATATGCAAATGATACTGTA TGCAAGCTTTTGGTTGGGAACAAATGCGATCTTGTTGAGAACAAAGTTGTCGATACGCAGACAGCAAAGGCGTTGGCCGATGAGCTAGGCATCCCTTTTC TGGAGACCAGTGCCAAAGATTCAATAAATGTGGAACAAGCTTTCTTAACAATGGCTGCAGAAATTAAGAAAAAAATGGGTAATCAACCGACAGCTAGCAA GGCGACCGGAACGGTTCAGATGAAAGGACAACCGATCCAGCAAAGCAACAACTGCTGTGGTTAA
AA sequence Show only first row Show all	>Lus10041117 pacid=23179689 polypeptide=Lus10041117 locus=Lus10041117.g ID=Lus10041117.BGIv1.0 annot-version=v1.0 MTTLRQRKWWTGGRKALTLQPVPAALLSQRGKELNSLPSPDGIHSLRARNPIIFNHGHRIRLSLQASANRRLLRWKILPAAPICCNFDFLLTPLFFLVSD EFGFNHLGFPFLILQDDSYVDSYISTIGVDFKIRTVELDGKTVKLQIWDTAGQERFRTITSSYYRGAHGIIIVYDVTDMDSFNNVKQWLNEIDRYANDTV CKLLVGNKCDLVENKVVDTQTAKALADELGIPFLETSAKDSINVEQAFLTMAAEIKKKMGNQPTASKATGTVQMKGQPIQQSNNCCG

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G11730		ATFP8, AtRABD1	ARABIDOPSIS THALIANA RAB GTPAS...		Lus10041117 [exp]	0	1
AT5G45600		TAF14b, GAS41	TBP-ASSOCIATED FACTOR 14B, GLI...		Lus10007555 [exp]	5.1	0.8341
AT5G40530			S-adenosyl-L-methionine-depend...		Lus10022276 [exp]	7.2	0.8293
AT3G26350			unknown protein		Lus10011406 [exp]	8.4	0.8148
AT2G41530		ATSFGH	ARABIDOPSIS THALIANA S-FORMYLG...		Lus10042038 [exp]	10.1	0.8162
AT5G09250		KIWI	ssDNA-binding transcriptional ...		Lus10013733 [exp]	11.0	0.8221
AT1G76730			NagB/RpiA/CoA transferase-like...		Lus10018870 [exp]	13.0	0.8136
AT2G17900		ASHR1, SDG37	ASH1-related 1, SET domain gro...		Lus10029712 [exp]	14.7	0.8285
AT1G14770			RING/FYVE/PHD zinc finger supe...		Lus10015562 [exp]	18.4	0.8184
AT2G27970		CKS2	CDK-subunit 2 (.1)		Lus10041349 [exp]	19.2	0.8030
AT1G80270		PPR596	PENTATRICOPEPTIDE REPEAT 596 (...		Lus10031004 [exp]	22.5	0.8050

Compare expression of checked genes

Lus10041117 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.