Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G36170 599 / 0 ATPRFB, HCF109 high chlorophyll fluorescent 109 (.1.2.3) AT1G56350 248 / 4e-78 Peptide chain release factor 2 (.1) AT3G57190 196 / 1e-58 PrfB3 peptide chain release factor 3, peptide chain release factor, putative (.1) AT3G62910 156 / 1e-43 APG3 ALBINO AND PALE GREEN, Peptide chain release factor 1 (.1) AT2G47020 124 / 6e-32 Peptide chain release factor 1 (.1.2) AT1G33330 52 / 2e-07 Class I peptide chain release factor (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10036446 [exp] 705 / 0 AT5G36170 651 / 0.0 high chlorophyll fluorescent 109 (.1.2.3) Lus10031411 [exp] 245 / 5e-77 AT1G56350 660 / 0.0 Peptide chain release factor 2 (.1) Lus10010922 [exp] 238 / 1e-73 AT1G56350 646 / 0.0 Peptide chain release factor 2 (.1) Lus10005944 [exp] 150 / 2e-41 AT3G62910 644 / 0.0 ALBINO AND PALE GREEN, Peptide chain release factor 1 (.1) Lus10029444 [exp] 139 / 3e-37 AT3G62910 632 / 0.0 ALBINO AND PALE GREEN, Peptide chain release factor 1 (.1) Lus10009980 [exp] 125 / 8e-32 AT2G47020 603 / 0.0 Peptide chain release factor 1 (.1.2) Lus10038039 [exp] 120 / 3e-30 AT2G47020 600 / 0.0 Peptide chain release factor 1 (.1.2) Lus10008558 [exp] 52 / 4e-07 AT1G33330 267 / 2e-89 Class I peptide chain release factor (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G075800 [exp] 607 / 0 AT5G36170 671 / 0.0 high chlorophyll fluorescent 109 (.1.2.3) Potri.013G009200 [exp] 245 / 8e-77 AT1G56350 676 / 0.0 Peptide chain release factor 2 (.1) Potri.006G045200 [exp] 235 / 2e-73 AT3G57190 426 / 7e-148 peptide chain release factor 3, peptide chain release factor, putative (.1) Potri.014G133400 [exp] 161 / 1e-45 AT3G62910 549 / 0.0 ALBINO AND PALE GREEN, Peptide chain release factor 1 (.1) Potri.014G114000 [exp] 131 / 3e-34 AT2G47020 579 / 0.0 Peptide chain release factor 1 (.1.2) Potri.010G181600 [exp] 81 / 4e-19 AT5G36170 88 / 2e-22 high chlorophyll fluorescent 109 (.1.2.3) Potri.002G188200 [exp] 62 / 3e-10 AT2G47020 380 / 3e-130 Peptide chain release factor 1 (.1.2) Potri.019G063800 [exp] 54 / 3e-08 AT1G33330 211 / 3e-68 Class I peptide chain release factor (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF03462 [flax] [poplar] PCRF PCRF domain CL0337 [flax] [poplar] RF PF00472 [flax] [poplar] RF-1 RF-1 domain
Representative CDS sequence Show only first row Show all	>Lus10041119 pacid=23180032 polypeptide=Lus10041119 locus=Lus10041119.g ID=Lus10041119.BGIv1.0 annot-version=v1.0 ATGGGGAATCCAAGCTTAAGGAAGGATGTGGAAGCTGCATCGGAGCGGGTTGAGGAGGTTAGAGCCTCCGCTGGGCTGCAGCAATTGGAACAAGAGATCG TTGATTTGGAGTCGAAAGCAGCTGATAGCTCCTTTTGGGATGATCAATCGGAAGCCCAGAAGACCCTTTCAGCCTTAACTGATGTCAAAGAGAAGATGAA GTTGCTTACTGAGTTTGAAACCAAGGTTGAAGATGCAGAAACTATAGTAAAGCTTACAGAGGAGATGGACTCAATAGACTCTTCACTTCTTGAAGAGGCT TCCACTATTGTTAAAGACTTAAACAAGGCATTGGATAAGTATGAGGTGACTCAACTGCTTTCTGGTCCTTACGATAAAGAAGGTGCGGTTATTTCGATCA CAGCTGGTGCCGGAGGCACTGATGCGCAGGACTGGGCTGAGATGCTTCTAAGAATGTATGTGAGATGGGGAGAGAATCAAGGATACAAAACAAAGGTGGT TGAGAAATCGCCTGGGGAGGAAGCTGGGATCAAGTCTGTGACGATTGAACTCGAAGGGAGGTATGCGTATGGTTATATATCTGGGGAGAAAGGAACTCAC AGGATAGTGCGACAGTCTCCTTTCAATTCTAAAGGTCTTCGTCAGACGAGCTTTGCTGGTGTAGAAGTAATGCCTCTTCTTCCTGAAGAGTCTGTGTTAG TTGATATACCTGAGGAGGACCTGGAATGGAATTTTTCAAGAGCAGGTGGGAAAGGAGGCCAAAATGTAAATAAAGTTGAAAGTGCTGTTAGGCTTACCCA CATTCCTACTGGTGTTACAGTTCGCTGCACAGTTGTTAGCTATCCATTTTCTGCAGAGGAGAGATCCCAGTTAGCGAACAAGAACAAAGCACTGAGCCGG CTGAAAGCGAAACTATTGGTGATCGCGGTGGAGCAGAGAGCCTCCGAGATCAAGGAAATCAGGGGAGATGCAGTGAAGGCCGAATGGGGACAGCAGATCC GAAACTACGTCTTCCATCCTTATAAGCTCGTGAAGGACGTGCGAACCACAGTCGAGACCTCGGACATTGCATCTGTTATGGATGGCGAGTTGGATTCCTT CATCAAAGCGTATCTCAAGCGCAAATATACTCTGGCAATGTCTTCCGCCTAA
AA sequence Show only first row Show all	>Lus10041119 pacid=23180032 polypeptide=Lus10041119 locus=Lus10041119.g ID=Lus10041119.BGIv1.0 annot-version=v1.0 MGNPSLRKDVEAASERVEEVRASAGLQQLEQEIVDLESKAADSSFWDDQSEAQKTLSALTDVKEKMKLLTEFETKVEDAETIVKLTEEMDSIDSSLLEEA STIVKDLNKALDKYEVTQLLSGPYDKEGAVISITAGAGGTDAQDWAEMLLRMYVRWGENQGYKTKVVEKSPGEEAGIKSVTIELEGRYAYGYISGEKGTH RIVRQSPFNSKGLRQTSFAGVEVMPLLPEESVLVDIPEEDLEWNFSRAGGKGGQNVNKVESAVRLTHIPTGVTVRCTVVSYPFSAEERSQLANKNKALSR LKAKLLVIAVEQRASEIKEIRGDAVKAEWGQQIRNYVFHPYKLVKDVRTTVETSDIASVMDGELDSFIKAYLKRKYTLAMSSA

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G36170		ATPRFB, HCF109	high chlorophyll fluorescent 1...		Lus10041119 [exp]	0	1
AT4G30825			Tetratricopeptide repeat (TPR)...		Lus10036601 [exp]	2.6	0.9068
AT4G02790		EMB3129	EMBRYO DEFECTIVE 3129, GTP-bin...		Lus10006927 [exp]	3.5	0.8989
AT1G09900			Pentatricopeptide repeat (PPR-...		Lus10031564 [exp]	4.7	0.9055
AT2G36000		EMB3114	EMBRYO DEFECTIVE 3114, Mitocho...		Lus10029422 [exp]	9.2	0.8547
AT5G50280		EMB1006	embryo defective 1006, Pentatr...		Lus10042081 [exp]	9.9	0.8684
AT3G19810			Protein of unknown function (D...		Lus10017411 [exp]	10.4	0.8294
AT5G27270		EMB976	EMBRYO DEFECTIVE 976, Tetratri...		Lus10003465 [exp]	12.7	0.8700
AT5G48910		LPA66	LOW PSII ACCUMULATION 66, Pent...		Lus10010908 [exp]	13.3	0.8588
AT2G36000		EMB3114	EMBRYO DEFECTIVE 3114, Mitocho...		Lus10004219 [exp]	14.1	0.8437
AT1G09900			Pentatricopeptide repeat (PPR-...		Lus10031565 [exp]	14.3	0.8812

Compare expression of checked genes

Lus10041119 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.