Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G31270 89 / 4e-20 Trihelix sequence-specific DNA binding transcription factors (.1) AT2G33550 54 / 4e-08 Trihelix Homeodomain-like superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10020182 [exp] 112 / 9e-28 AT4G31270 144 / 1e-39 sequence-specific DNA binding transcription factors (.1) Lus10026986 [exp] 106 / 2e-25 AT4G31270 149 / 3e-41 sequence-specific DNA binding transcription factors (.1) Lus10036449 [exp] 90 / 7e-20 AT1G36050 645 / 0.0 Endoplasmic reticulum vesicle transporter protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G279100 [exp] 118 / 1e-29 AT4G31270 145 / 5e-40 sequence-specific DNA binding transcription factors (.1) Potri.018G002801 [exp] 108 / 2e-26 AT4G31270 154 / 4e-43 sequence-specific DNA binding transcription factors (.1) Potri.015G105800 [exp] 58 / 3e-09 AT2G33550 187 / 9e-57 Homeodomain-like superfamily protein (.1) Potri.003G163000 [exp] 52 / 3e-07 AT2G33550 340 / 9e-117 Homeodomain-like superfamily protein (.1) Potri.001G066900 [exp] 49 / 2e-06 AT2G33550 328 / 4e-112 Homeodomain-like superfamily protein (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10041120 pacid=23179544 polypeptide=Lus10041120 locus=Lus10041120.g ID=Lus10041120.BGIv1.0 annot-version=v1.0 ATGGCTCCAGAATGGACGATCAACGAGGAGCTGATCCTGGTCGCTTCGATCGCCTGGATCGAAGGAGACTGGCTGACGGCTAATTTCTCGACCTCCTCCT CGTCCTTCTTTCAGCAATGGGAGATTCTGGTAGGCAAATGCGCTGCGATGGGGGTTCGCCGGAATCTGTATCAGTTCCGAGCGAAGTGGACTTCATTGCT ATCGGATTACAATCTGATCAGAGAATGGAATTCCATGGCCGGTGGAGATCAGGGGGCGTTATTTGATTCTTACTGGTACCTGGAGAGCGAGATGAGAGAA CGATTCGGCTTGCCTGAGAGGTTTGATGATCGAGTTTTCAGAGCAATCGATGACTACGTTAATAGGTTGCTGCAGTCCGGCGGGGCGGATCGGTATCCGG ACCCGAAAGGTGATGCTGAAGCTGACGTGGCGGCAGATTTCTTCGTTGAGATTCCAGGGCCAGAAGGGGATCCATTGTTGCAAGACCTGGAAGCAGAGCT ATACCATCAAGAAGCTGCTCTTGAAGAAATTGCGCATCAACCAGAGCCAGAGTACATGGAAGAGATCAATCCTGATCCTCTGCCGGAACACCAAACGTAC GGCCAGTTCATCTTCGCGGAAGAAGAAGAAGAACTTGAAGGGCGTCATGGTTGGGAGAAAATGGAGGCTCCAGTGAGAGCAGAGGAGGAAGATGAAGAAA GTCGCGTTGAAGAAGAAGCTCTTCATCAGGACAGAGGAAGTATGGTGTTGTTGGGAGAGCAGAGGAGGTATAACAGAGGGAGGAAGCCGAAAGCGCTGGT GGAAGAAGAGAAGACGGCGGAGCAAGTTTATGAGACGGCGCAGTTGATGCTAGCTGTGGCTAAAGGCGATGATGCTGATGTTCATGATATTGATCATCCG CCATTGAAGCAAGCGGAGAAGCTTATGGGATGCCTGGTTCAGATTGTGGGTATGCTTGAACGCTATCCCTATCTGGTTCAAAAATACAGCTAG
AA sequence Show only first row Show all	>Lus10041120 pacid=23179544 polypeptide=Lus10041120 locus=Lus10041120.g ID=Lus10041120.BGIv1.0 annot-version=v1.0 MAPEWTINEELILVASIAWIEGDWLTANFSTSSSSFFQQWEILVGKCAAMGVRRNLYQFRAKWTSLLSDYNLIREWNSMAGGDQGALFDSYWYLESEMRE RFGLPERFDDRVFRAIDDYVNRLLQSGGADRYPDPKGDAEADVAADFFVEIPGPEGDPLLQDLEAELYHQEAALEEIAHQPEPEYMEEINPDPLPEHQTY GQFIFAEEEEELEGRHGWEKMEAPVRAEEEDEESRVEEEALHQDRGSMVLLGEQRRYNRGRKPKALVEEEKTAEQVYETAQLMLAVAKGDDADVHDIDHP PLKQAEKLMGCLVQIVGMLERYPYLVQKYS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G31270	Trihelix		sequence-specific DNA binding ...		Lus10041120 [exp]	0	1
AT5G16460			Putative adipose-regulatory pr...		Lus10026836 [exp]	4.0	0.7167
AT5G60900		RLK1	receptor-like protein kinase 1...		Lus10000422 [exp]	6.0	0.8152
AT2G36780			UDP-Glycosyltransferase superf...		Lus10023894 [exp]	13.3	0.7821
AT3G50390			Transducin/WD40 repeat-like su...		Lus10009510 [exp]	16.2	0.6717
AT3G12660		FLA14	FASCICLIN-like arabinogalactan...		Lus10026107 [exp]	21.2	0.7654
AT1G78610		MSL6	mechanosensitive channel of sm...		Lus10012515 [exp]	21.3	0.6623
AT5G25620		YUC6	YUCCA6, Flavin-binding monooxy...		Lus10024023 [exp]	26.1	0.7530
AT3G63060		EDL3	EID1-like 3 (.1)		Lus10028001 [exp]	30.0	0.7064
					Lus10040066 [exp]	30.3	0.7590
AT2G32360			Ubiquitin-like superfamily pro...		Lus10015125 [exp]	30.7	0.7554

Compare expression of checked genes

Lus10041120 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.