Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G36050 382 / 7e-133 Endoplasmic reticulum vesicle transporter protein (.1.2) AT1G22200 357 / 6e-124 Endoplasmic reticulum vesicle transporter protein (.1.2) AT3G22290 80 / 7e-17 Endoplasmic reticulum vesicle transporter protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10036449 [exp] 451 / 3e-159 AT1G36050 645 / 0.0 Endoplasmic reticulum vesicle transporter protein (.1.2) Lus10036158 [exp] 345 / 3e-117 AT1G36050 596 / 0.0 Endoplasmic reticulum vesicle transporter protein (.1.2) Lus10003406 [exp] 168 / 8e-49 AT1G36050 325 / 2e-109 Endoplasmic reticulum vesicle transporter protein (.1.2) Lus10021024 [exp] 82 / 1e-17 AT3G22290 435 / 6e-153 Endoplasmic reticulum vesicle transporter protein (.1) Lus10027795 [exp] 76 / 2e-15 AT3G22290 565 / 0.0 Endoplasmic reticulum vesicle transporter protein (.1) Lus10023828 [exp] 67 / 3e-12 AT3G22290 478 / 5e-170 Endoplasmic reticulum vesicle transporter protein (.1) Lus10035503 [exp] 64 / 2e-11 AT3G22290 442 / 1e-155 Endoplasmic reticulum vesicle transporter protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G168800 [exp] 413 / 4e-145 AT1G36050 724 / 0.0 Endoplasmic reticulum vesicle transporter protein (.1.2) Potri.002G094400 [exp] 388 / 8e-135 AT1G36050 692 / 0.0 Endoplasmic reticulum vesicle transporter protein (.1.2) Potri.001G206100 [exp] 325 / 3e-110 AT1G36050 540 / 0.0 Endoplasmic reticulum vesicle transporter protein (.1.2) Potri.003G023500 [exp] 311 / 6e-105 AT1G36050 521 / 0.0 Endoplasmic reticulum vesicle transporter protein (.1.2) Potri.016G022800 [exp] 78 / 4e-16 AT3G22290 574 / 0.0 Endoplasmic reticulum vesicle transporter protein (.1) Potri.006G023900 [exp] 74 / 8e-15 AT3G22290 572 / 0.0 Endoplasmic reticulum vesicle transporter protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF07970 [flax] [poplar] COPIIcoated_ERV Endoplasmic reticulum vesicle transporter
Representative CDS sequence Show only first row Show all	>Lus10041121 pacid=23180039 polypeptide=Lus10041121 locus=Lus10041121.g ID=Lus10041121.BGIv1.0 annot-version=v1.0 ATGGACATAAGTGGAGAACAACATCTTGATGTGAAACATGACATAATCAAGAAGAGACTCGACTCACATGGCAATGTAATAGAAGCACGGCCTGATGGAA TTGGTGCTCCTAAGATTGAAAAGCCTTTGCAGAAACATGGTGGGAGGCTTGACCACAATGAGACATATTGTGGTTCATGCTTTGGTGCTGAAGAGTCAGA TGACCATTGTTGTAATTCTTGTGAGGATGTTCGTGAAGCATATCGTAAGAAGGGCTGGGCACTCTCTAATCCAGATCTTATCGACCAGTGTAAAAGAGAA GGCTTTCTTCAGAAAATCAAAGAGGAAGAAGGTGAAGGGTGTAATGTGTATGGATTCCTTGAGGTTAATAAGGTGGCTGGTAATTTCCATTTTGCACCAG GGAAGAGTTTTCAACAATCAGGAGTTCATGTTCATGATATCCTGGCTTTTCAGAAAGACACTTTCAATGTAAGACTACATCATACCGTCTTTTTTACCTT ATATCGGGAAAACAACAAGACTATTTTAACCATTATACGTCGGACATCTGCACAGGTTAGTCACCATATTAACAGGCTATCATTTGGAGAATACTTCCCC GGGGCTGTAAATCCTCTTGATGGCCGGATGTTTACCAATTTCAGTGTACTTTGGACTCAAGAATCTCCAAGTGGCATGTATCAGTACTTTATCAAGGTTT TGCTTCGTAAACTCTTCTCTGTAACTGAACATTTTAGGAGTGCGGATGCTGGTCGGCTTCAGTCCCTCCCGGGAGTGTTCTTCTTCTATGATCTTTCTCC AATTAAGTTTCCACCATCTAATCCTCCTTTATTTCTCTGTACCCTTCTCAGGTTACATTCATGGAGGAGCATGTGTCCTTCTTGCACTTCTTAA
AA sequence Show only first row Show all	>Lus10041121 pacid=23180039 polypeptide=Lus10041121 locus=Lus10041121.g ID=Lus10041121.BGIv1.0 annot-version=v1.0 MDISGEQHLDVKHDIIKKRLDSHGNVIEARPDGIGAPKIEKPLQKHGGRLDHNETYCGSCFGAEESDDHCCNSCEDVREAYRKKGWALSNPDLIDQCKRE GFLQKIKEEEGEGCNVYGFLEVNKVAGNFHFAPGKSFQQSGVHVHDILAFQKDTFNVRLHHTVFFTLYRENNKTILTIIRRTSAQVSHHINRLSFGEYFP GAVNPLDGRMFTNFSVLWTQESPSGMYQYFIKVLLRKLFSVTEHFRSADAGRLQSLPGVFFFYDLSPIKFPPSNPPLFLCTLLRLHSWRSMCPSCTS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G36050			Endoplasmic reticulum vesicle ...		Lus10041121 [exp]	0	1
AT3G59660			C2 domain-containing protein /...		Lus10025600 [exp]	9.2	0.9055
AT4G33430		SERK3, RKS10, E...	RECEPTOR KINASES LIKE SERK 10,...		Lus10020962 [exp]	12.7	0.9018
AT3G26935			DHHC-type zinc finger family p...		Lus10016754 [exp]	17.2	0.9036
AT1G35620		ATPDI8, ATPDIL5...	ARABIDOPSIS THALIANA PROTEIN D...		Lus10016798 [exp]	18.0	0.8930
AT1G55730		ATCAX5	cation exchanger 5 (.1.2)		Lus10033396 [exp]	20.1	0.8729
AT1G55730		ATCAX5	cation exchanger 5 (.1.2)		Lus10034853 [exp]	20.6	0.8564
AT3G22290			Endoplasmic reticulum vesicle ...		Lus10023828 [exp]	27.6	0.8987
AT2G35610		XEG113	xyloglucanase 113 (.1)		Lus10027804 [exp]	28.7	0.8517
AT2G20120		COV1	CONTINUOUS VASCULAR RING, Prot...		Lus10011099 [exp]	32.8	0.8824
AT5G07630			lipid transporters (.1)		Lus10038931 [exp]	33.9	0.8640

Compare expression of checked genes

Lus10041121 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.