Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G07900 146 / 6e-40 Mitochondrial transcription termination factor family protein (.1) AT1G21150 115 / 1e-28 Mitochondrial transcription termination factor family protein (.1) AT5G64950 112 / 1e-27 Mitochondrial transcription termination factor family protein (.1) AT1G61970 98 / 2e-22 Mitochondrial transcription termination factor family protein (.1.2) AT1G61980 90 / 1e-19 Mitochondrial transcription termination factor family protein (.1) AT1G61960 86 / 5e-18 Mitochondrial transcription termination factor family protein (.1) AT1G61990 84 / 1e-17 Mitochondrial transcription termination factor family protein (.1) AT1G62120 83 / 4e-17 Mitochondrial transcription termination factor family protein (.1) AT1G62010 81 / 9e-17 Mitochondrial transcription termination factor family protein (.1) AT1G79220 78 / 1e-15 Mitochondrial transcription termination factor family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10036450 [exp] 568 / 0 AT5G07900 176 / 3e-51 Mitochondrial transcription termination factor family protein (.1) Lus10008688 [exp] 154 / 5e-43 AT5G07900 197 / 2e-59 Mitochondrial transcription termination factor family protein (.1) Lus10040817 [exp] 142 / 2e-38 AT5G07900 225 / 6e-70 Mitochondrial transcription termination factor family protein (.1) Lus10016550 [exp] 133 / 3e-35 AT5G07900 219 / 9e-68 Mitochondrial transcription termination factor family protein (.1) Lus10004957 [exp] 124 / 5e-32 AT5G07900 238 / 4e-75 Mitochondrial transcription termination factor family protein (.1) Lus10004329 [exp] 119 / 3e-30 AT5G64950 238 / 2e-75 Mitochondrial transcription termination factor family protein (.1) Lus10040820 [exp] 115 / 1e-28 AT5G07900 221 / 2e-68 Mitochondrial transcription termination factor family protein (.1) Lus10028912 [exp] 112 / 1e-27 AT5G64950 249 / 1e-79 Mitochondrial transcription termination factor family protein (.1) Lus10029199 [exp] 100 / 3e-23 AT5G64950 226 / 1e-70 Mitochondrial transcription termination factor family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G034700 [exp] 154 / 3e-43 AT5G07900 202 / 2e-61 Mitochondrial transcription termination factor family protein (.1) Potri.001G030300 [exp] 154 / 7e-43 AT5G07900 190 / 2e-56 Mitochondrial transcription termination factor family protein (.1) Potri.001G034600 [exp] 152 / 3e-42 AT5G07900 197 / 4e-59 Mitochondrial transcription termination factor family protein (.1) Potri.001G034933 [exp] 145 / 5e-40 AT5G07900 194 / 3e-58 Mitochondrial transcription termination factor family protein (.1) Potri.003G190300 [exp] 145 / 1e-39 AT5G07900 209 / 8e-64 Mitochondrial transcription termination factor family protein (.1) Potri.015G038500 [exp] 143 / 6e-39 AT5G07900 218 / 2e-67 Mitochondrial transcription termination factor family protein (.1) Potri.001G034500 [exp] 142 / 9e-39 AT5G07900 208 / 2e-63 Mitochondrial transcription termination factor family protein (.1) Potri.001G035000 [exp] 140 / 1e-37 AT5G07900 209 / 7e-64 Mitochondrial transcription termination factor family protein (.1) Potri.001G029400 [exp] 139 / 1e-37 AT5G07900 181 / 4e-53 Mitochondrial transcription termination factor family protein (.1) Potri.003G190700 [exp] 137 / 5e-37 AT5G07900 213 / 3e-65 Mitochondrial transcription termination factor family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF02536 [flax] [poplar] mTERF mTERF
Representative CDS sequence Show only first row Show all	>Lus10041122 pacid=23179858 polypeptide=Lus10041122 locus=Lus10041122.g ID=Lus10041122.BGIv1.0 annot-version=v1.0 ATGGCTCTTTCAATCCGCAAGTCTCTCTTGTCATTATATATAAGGTCACCGTCCTTTACCAACACTAGCTCATTCTTCTTCTCAACCCTCAAAACCCCAA AATCCAAATCCAAATCCAAATCCAAATCCAAAATCTCAGTCTTTGATTACTTAGTCAACCAGCAGAAGTTCTCGCCTGACATAGCCGCCAAAGCCTTATC AGTCGCAGTCGTGAAGAACCTGAAGAACCCTCAAAACGCCGATTCCGTACTATCATACCTAATCGCCGTCGGATTCTCCCGCTCCCAAATCGAAACTATC GTCCAAAAGGTCCCCCGAGTCCTCTCCTCCGACGTCGACAACGTTCTAAAACCTAAAGTCGAAGTCTTCTCCGATTCAGGATTAAAACCAAAGGACATGG CGGAGATCATCACCGGAGATCCATGGATCCTAACCAGAAGCCCAGTCAATAGGTTAGCTCCTTCAATAGAAGCATTAAAGAGCGTAGTCGGATCAGTATC CGTTGTAGCCTCATTGTTGAAGAAATCCGCTTGGTTCTTAAAACTCGATCTGAACGAAACATTGCTCCCCAACGTCGAATACTTCCAATCGTTAGGACTA ACTCACGAGAAGATGCTCCGATTCATGTCGAGCTTCCCTCGATTCTTCCTCTTCAAGCCCGAGTTAGTCAAGGAATTCGCTCGAAAGGTCGAAGAGATGG GATTCGACAAGGAATCCACGATGTTTTTATATGCTGTTCGTGTTGTGAGCTCGATGAGTCCGGAGAAATGGGTGGGCAAGCTGAATCTGCTACGAGAGCT CGGATTCTCTGAGGAGGATATCGTGTTTGCGTTCAAGAGGCAGCCGATGGCCTTCTCGACATCGGATAGGAAGGTGAAGGAAGTGGTGGAGTTCTTGTTG AGCGAGACTGATCTCGACATACAGAGCATTGTGAAGTCTCCGCAGTTGCTTCTGTGTAGTATCAAGAATCGGTTTAAGCCGAGGCTGATGGTTATAAAGG CTTTGCAGGAGAAGAACCTGGTGCGAGAGATTAATATGTGGAATGTTTACAAGTTGGGGCATATTCCGTTCTCGAAGAGGTATGTGTTTCCGTACTGTGA GAAGGTTGATGGCTTGTTAAGGATAGCTGCTGGGGAATAG
AA sequence Show only first row Show all	>Lus10041122 pacid=23179858 polypeptide=Lus10041122 locus=Lus10041122.g ID=Lus10041122.BGIv1.0 annot-version=v1.0 MALSIRKSLLSLYIRSPSFTNTSSFFFSTLKTPKSKSKSKSKSKISVFDYLVNQQKFSPDIAAKALSVAVVKNLKNPQNADSVLSYLIAVGFSRSQIETI VQKVPRVLSSDVDNVLKPKVEVFSDSGLKPKDMAEIITGDPWILTRSPVNRLAPSIEALKSVVGSVSVVASLLKKSAWFLKLDLNETLLPNVEYFQSLGL THEKMLRFMSSFPRFFLFKPELVKEFARKVEEMGFDKESTMFLYAVRVVSSMSPEKWVGKLNLLRELGFSEEDIVFAFKRQPMAFSTSDRKVKEVVEFLL SETDLDIQSIVKSPQLLLCSIKNRFKPRLMVIKALQEKNLVREINMWNVYKLGHIPFSKRYVFPYCEKVDGLLRIAAGE

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G07900			Mitochondrial transcription te...		Lus10041122 [exp]	0	1
AT1G33140		PGY2	PIGGYBACK2, Ribosomal protein ...		Lus10032962 [exp]	2.8	0.9397
AT3G49910			Translation protein SH3-like f...		Lus10019283 [exp]	3.0	0.9410
AT2G17670			Tetratricopeptide repeat (TPR)...		Lus10028379 [exp]	3.0	0.9353
AT5G44500			Small nuclear ribonucleoprotei...		Lus10023386 [exp]	4.9	0.9322
AT5G64950			Mitochondrial transcription te...		Lus10004329 [exp]	5.3	0.9038
AT3G22670			Pentatricopeptide repeat (PPR)...		Lus10041193 [exp]	6.7	0.9141
AT5G06550			unknown protein		Lus10029343 [exp]	7.3	0.9314
AT3G57490			Ribosomal protein S5 family pr...		Lus10014909 [exp]	9.2	0.9287
AT3G02490			Pentatricopeptide repeat (PPR)...		Lus10032092 [exp]	10.0	0.9109
AT3G09630			Ribosomal protein L4/L1 family...		Lus10019904 [exp]	10.2	0.9316

Compare expression of checked genes

Lus10041122 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.