Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G78100 228 / 5e-73 AUF1 auxin up-regulated f-box protein 1, F-box family protein (.1) AT1G22220 209 / 5e-66 AUF2 auxin up-regulated f-box protein 2, F-box family protein (.1) AT4G18380 175 / 8e-52 F-box family protein (.1.2) AT1G30200 152 / 4e-43 F-box family protein (.1.2) AT5G46170 134 / 4e-36 F-box family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10036451 [exp] 521 / 0 AT1G78100 253 / 2e-82 auxin up-regulated f-box protein 1, F-box family protein (.1) Lus10023298 [exp] 157 / 1e-44 AT5G46170 505 / 4e-179 F-box family protein (.1) Lus10038511 [exp] 127 / 3e-34 AT5G46170 453 / 5e-161 F-box family protein (.1) Lus10013431 [exp] 49 / 1e-06 AT4G18380 102 / 4e-25 F-box family protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G094600 [exp] 269 / 5e-89 AT1G78100 292 / 9e-98 auxin up-regulated f-box protein 1, F-box family protein (.1) Potri.005G166500 [exp] 262 / 2e-86 AT1G22220 295 / 1e-99 auxin up-regulated f-box protein 2, F-box family protein (.1) Potri.004G065900 [exp] 168 / 5e-49 AT5G46170 499 / 3e-177 F-box family protein (.1) Potri.011G082900 [exp] 165 / 7e-48 AT5G46170 488 / 9e-173 F-box family protein (.1) Potri.009G047600 [exp] 110 / 8e-28 AT4G18380 197 / 4e-60 F-box family protein (.1.2) Potri.003G203500 [exp] 47 / 6e-06 AT4G18380 49 / 2e-06 F-box family protein (.1.2) Potri.001G022400 [exp] 45 / 3e-05 ND / Potri.001G021900 [exp] 45 / 4e-05 AT1G22220 45 / 4e-05 auxin up-regulated f-box protein 2, F-box family protein (.1) Potri.001G022100 [exp] 45 / 4e-05 AT1G22220 45 / 4e-05 auxin up-regulated f-box protein 2, F-box family protein (.1) Potri.003G203000 [exp] 44 / 6e-05 AT1G22220 52 / 2e-07 auxin up-regulated f-box protein 2, F-box family protein (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10041123 pacid=23179912 polypeptide=Lus10041123 locus=Lus10041123.g ID=Lus10041123.BGIv1.0 annot-version=v1.0 ATGGAAGCTGATGATGACTATTTTGATCGTCTCCCAGACTCAATCGTCTTAACGATCTTCAACAGCATCGCCGACGTCAAGACCCTCATCCGCTGCCGCT CAGTATCACAGCGGTTCAACTCACTGGTACCTGAAACAGAGTCGCTCTGCCTCCGGGTCGACCGGGTCATATCGTCGAGCTCCACATCCGGCGACGAAAA CGACAGCGATGACGAAGACCCGTTCTTCGGCTTCTTCAAGTCAGTTGTTGAATCCATCCAGACTCTGTTCAAGACGGGACCACCGGACGGGTTTGATCAA GGAGTCTGTTCGCCGGCTGAGATTCTCTCCGGGTTTGACCGGATCCGCCGGCTGGAAATCGAGCTTCCCAGTGGTGACATGCGGCTGGAGAAGGGAGTGG TGGTTAGATGGAGAGCCGAGTTCGGGCAGACGTTACGGAGCTGCGTGATCATCGGGTTCGGGTCGGGCGGCGGGAGAAATTCGGGTTTGGCTGAGGGGGT GAAGCGGGCGGTGGTTTGGACGGTAAGCACTTTGATGGCTGCGTCGTCGAGGCACTGCTTGGCCGGAGACGTGTTAGTGAGGCCGGGGGATCAGGGGATG GAGCGGATGGTGCTTAAGGATGCTGACGGAGAAGGGACTCTGTTGATGGAGAAGGACGGGCTGGCAGAGATGGCGGCGGATCTCGTCGCCGGCGGTGGGT CGGATCGGAGGAGGACGGTGGTTCCGGCGGTAAAAATGAGGATGAGGTACGAAGGTCAACTGGTGATGAAGAACGGAAGGTCGGTCAAGAGTGCCATGCT GGCGGTTGTGCGGCCGTTTTCTTCTCCGGTAAGTAATGACGTGCAGGATGCTGAGCTGGCAATGGCTGCGTTCGGCTGTGGGGCCTACAGGGATGTCGTC GTGGCGCTTCTCAAGAGGAGGAGCTTTGGCCTTGAGATGAACCCGTTTTAA
AA sequence Show only first row Show all	>Lus10041123 pacid=23179912 polypeptide=Lus10041123 locus=Lus10041123.g ID=Lus10041123.BGIv1.0 annot-version=v1.0 MEADDDYFDRLPDSIVLTIFNSIADVKTLIRCRSVSQRFNSLVPETESLCLRVDRVISSSSTSGDENDSDDEDPFFGFFKSVVESIQTLFKTGPPDGFDQ GVCSPAEILSGFDRIRRLEIELPSGDMRLEKGVVVRWRAEFGQTLRSCVIIGFGSGGGRNSGLAEGVKRAVVWTVSTLMAASSRHCLAGDVLVRPGDQGM ERMVLKDADGEGTLLMEKDGLAEMAADLVAGGGSDRRRTVVPAVKMRMRYEGQLVMKNGRSVKSAMLAVVRPFSSPVSNDVQDAELAMAAFGCGAYRDVV VALLKRRSFGLEMNPF

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G78100		AUF1	auxin up-regulated f-box prote...		Lus10041123 [exp]	0	1
AT5G04760	MYB		Duplicated homeodomain-like su...		Lus10036413 [exp]	2.4	0.9538
AT5G49450	bZIP	ATBZIP1	basic leucine-zipper 1 (.1)		Lus10016884 [exp]	3.2	0.9514
AT5G49450	bZIP	ATBZIP1	basic leucine-zipper 1 (.1)		Lus10037750 [exp]	5.5	0.9442
AT4G14440		HCD1, ATECI3	DELTA\(3\), DELTA\(2\)-ENOYL C...		Lus10041154 [exp]	5.5	0.9193
AT5G18170		GDH1	glutamate dehydrogenase 1 (.1)		Lus10020288 [exp]	6.3	0.9350
AT1G70520		ASG6, CRK2	ALTERED SEED GERMINATION 6, cy...		Lus10030901 [exp]	8.2	0.9402
AT5G39150			RmlC-like cupins superfamily p...		Lus10003114 [exp]	9.3	0.8980
AT2G43000	NAC	ANAC042, JUB1, ...	NAC domain containing protein ...		Lus10031767 [exp]	11.1	0.8980
AT5G04760	MYB		Duplicated homeodomain-like su...		Lus10041088 [exp]	12.0	0.9306
AT1G80290			Nucleotide-diphospho-sugar tra...		Lus10020174 [exp]	12.5	0.8905

Compare expression of checked genes

Lus10041123 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.