Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G49350 96 / 3e-24 Glycine-rich protein family (.1.2) AT1G56320 77 / 6e-18 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10016857 [exp] 130 / 3e-37 AT5G49350 138 / 3e-40 Glycine-rich protein family (.1.2) Lus10037727 [exp] 127 / 2e-35 AT5G49350 136 / 1e-38 Glycine-rich protein family (.1.2) Lus10031407 [exp] 52 / 3e-08 ND 85 / 1e-20 Lus10010927 [exp] 46 / 9e-06 AT1G56140 343 / 2e-107 Leucine-rich repeat transmembrane protein kinase (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G108400 [exp] 99 / 9e-26 AT5G49350 138 / 9e-41 Glycine-rich protein family (.1.2) Potri.005G019200 [exp] 85 / 8e-21 AT1G56320 130 / 4e-39 unknown protein
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10041125 pacid=23179957 polypeptide=Lus10041125 locus=Lus10041125.g ID=Lus10041125.BGIv1.0 annot-version=v1.0 ATGGCAAAGTATTCATCCACAATCAGGATGGGAGTTATGGCCGTGCTTCTCATGTCCGCACTCATTTCTCTATGTCAATTAGGAAGGGCAAACGACGTCG CTGGAGGTAATGGAAGTTCTGGAAGCTCGTCGTCATCTTCGAGCAGCAATAACAAGAGCAGCAACAAGCACAGCGATCCAGCCCAAATCGTAGCTAAAGC CATGCAATGCTTCAATAACAGGACAGTATACAGGAACTGCGACGAAGACATGAGACTGAACGAGAGCGGGAGCCTCAGAGTGGAAAACATGGAAGCTTAT TGCAGAGGGGCTTGCTTTACAGAGACCAATCTGGTGCTCAACTGCTTACAAGGGATCATGACCAACTTCAAATTCCATAACAACGCCACCATCAACGATG TTAAGGACACTTTCAAGGCTACCTGCACCAGTACCAGCACTACTGCTACACCAGATGATGATGCCCCTTCTTCTAGTAGTACCAGTACTAGTACTGTACT CGAAGCCAGTACTCCTTATAAGAATCTCCAGGCTTCTCAAACGACTGCTCTCAATGCTGCAACTTGGTCCTTGTATGTTATTACCTGCGTCGTGGCCAGC CAGCTGGCTATCAACCATTGGTGA
AA sequence Show only first row Show all	>Lus10041125 pacid=23179957 polypeptide=Lus10041125 locus=Lus10041125.g ID=Lus10041125.BGIv1.0 annot-version=v1.0 MAKYSSTIRMGVMAVLLMSALISLCQLGRANDVAGGNGSSGSSSSSSSSNNKSSNKHSDPAQIVAKAMQCFNNRTVYRNCDEDMRLNESGSLRVENMEAY CRGACFTETNLVLNCLQGIMTNFKFHNNATINDVKDTFKATCTSTSTTATPDDDAPSSSSTSTSTVLEASTPYKNLQASQTTALNAATWSLYVITCVVAS QLAINHW

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G49350			Glycine-rich protein family (....		Lus10041125 [exp]	0	1
AT5G37690			SGNH hydrolase-type esterase s...		Lus10018641 [exp]	2.6	0.9222
AT5G37690			SGNH hydrolase-type esterase s...		Lus10039877 [exp]	4.0	0.9178
AT5G05390		LAC12	laccase 12 (.1)		Lus10009841 [exp]	4.5	0.8858
AT5G58860		CYP86A1	"cytochrome P450, family 86, s...		Lus10040687 [exp]	10.5	0.8884
AT1G04520		PDLP2	plasmodesmata-located protein ...		Lus10003754 [exp]	10.7	0.8050
AT1G11920			Pectin lyase-like superfamily ...		Lus10018430 [exp]	13.7	0.7950
AT4G33880	bHLH	RSL2, bHLH085	ROOT HAIR DEFECTIVE 6-LIKE 2 (...		Lus10001068 [exp]	14.8	0.8086
AT2G30395	OFP	ATOFP17, OFP17	ovate family protein 17 (.1)		Lus10008588 [exp]	16.1	0.7484
AT1G74460			GDSL-like Lipase/Acylhydrolase...		Lus10019095 [exp]	18.6	0.8572
AT5G23750			Remorin family protein (.1.2)		Lus10008014 [exp]	18.7	0.7300

Compare expression of checked genes

Lus10041125 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.