Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G16940 405 / 3e-128 CAMTA calmodulin binding;transcription regulators (.1) AT4G16150 392 / 2e-122 CAMTA calmodulin binding;transcription regulators (.1) AT5G64220 149 / 8e-37 CAMTA Calmodulin-binding transcription activator protein with CG-1 and Ankyrin domains (.1.2) AT2G22300 149 / 9e-37 CAMTA SR1, CAMTA3 CALMODULIN-BINDING TRANSCRIPTION ACTIVATOR 3, signal responsive 1 (.1.2) AT5G09410 142 / 3e-34 CAMTA CAMTA1, EICBP.B calmodulin-binding transcription activator 1, ethylene induced calmodulin binding protein (.1.2.3) AT1G67310 120 / 1e-27 CAMTA Calmodulin-binding transcription activator protein with CG-1 and Ankyrin domains (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10036455 [exp] 902 / 0 AT4G16150 845 / 0.0 calmodulin binding;transcription regulators (.1) Lus10037738 [exp] 621 / 0 AT4G16150 1033 / 0.0 calmodulin binding;transcription regulators (.1) Lus10016873 [exp] 575 / 0 AT3G16940 929 / 0.0 calmodulin binding;transcription regulators (.1) Lus10011352 [exp] 150 / 5e-37 AT1G67310 637 / 0.0 Calmodulin-binding transcription activator protein with CG-1 and Ankyrin domains (.1) Lus10003119 [exp] 147 / 6e-36 AT1G67310 640 / 0.0 Calmodulin-binding transcription activator protein with CG-1 and Ankyrin domains (.1) Lus10041704 [exp] 147 / 7e-36 AT2G22300 912 / 0.0 CALMODULIN-BINDING TRANSCRIPTION ACTIVATOR 3, signal responsive 1 (.1.2) Lus10024044 [exp] 144 / 4e-35 AT2G22300 822 / 0.0 CALMODULIN-BINDING TRANSCRIPTION ACTIVATOR 3, signal responsive 1 (.1.2) Lus10003405 [exp] 138 / 4e-33 AT5G64220 1028 / 0.0 Calmodulin-binding transcription activator protein with CG-1 and Ankyrin domains (.1.2) Lus10036162 [exp] 132 / 4e-31 AT5G64220 818 / 0.0 Calmodulin-binding transcription activator protein with CG-1 and Ankyrin domains (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G141700 [exp] 509 / 2e-167 AT4G16150 1038 / 0.0 calmodulin binding;transcription regulators (.1) Potri.008G107900 [exp] 489 / 2e-159 AT4G16150 1026 / 0.0 calmodulin binding;transcription regulators (.1) Potri.010G153100 [exp] 149 / 2e-36 AT5G64220 676 / 0.0 Calmodulin-binding transcription activator protein with CG-1 and Ankyrin domains (.1.2) Potri.007G093400 [exp] 145 / 2e-35 AT2G22300 991 / 0.0 CALMODULIN-BINDING TRANSCRIPTION ACTIVATOR 3, signal responsive 1 (.1.2) Potri.005G075100 [exp] 145 / 2e-35 AT2G22300 976 / 0.0 CALMODULIN-BINDING TRANSCRIPTION ACTIVATOR 3, signal responsive 1 (.1.2) Potri.001G057800 [exp] 138 / 4e-33 AT1G67310 832 / 0.0 Calmodulin-binding transcription activator protein with CG-1 and Ankyrin domains (.1) Potri.003G170600 [exp] 128 / 5e-30 AT1G67310 856 / 0.0 Calmodulin-binding transcription activator protein with CG-1 and Ankyrin domains (.1) Potri.008G099733 [exp] 60 / 3e-11 AT5G64220 97 / 1e-25 Calmodulin-binding transcription activator protein with CG-1 and Ankyrin domains (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0220 [flax] [poplar] EF_hand PF00612 [flax] [poplar] IQ IQ calmodulin-binding motif CL0220 [flax] [poplar] PF03859 [flax] [poplar] CG-1 CG-1 domain
Representative CDS sequence Show only first row Show all	>Lus10041126 pacid=23180010 polypeptide=Lus10041126 locus=Lus10041126.g ID=Lus10041126.BGIv1.0 annot-version=v1.0 ATGGCGACTGACTTTCCAGGGCAGCTGCTTGGATCGGAGATTCATGGATTCCACAACCTCCAAGATTTGGATGCTGGGAAGGTGTTGGAGGAAGCGAAAT CACGATGGCTTCGTCCAAATGAGATTCATGCAATCTTGTGTAATCCGAAATACTTCACCGTCTTTGTCAAGCCTGTGAACTTACCTAAGAGTGGCACCAT TGTATTGTTTGACCGTAAGATGCTTAGGAACTTCAGGAAGGATGGTTATAGATGGAAGAAGAAAAGGGATGGGAAGACCATTAAAGAAGCTCATGAGCAT TTAAAAGTTGGTACTGAAGAAAGGATTCATGTATACTATGCACATGGTGAAGATAATCAGACTTTTGTCCGCCGATGTTATTGGCTGCTTGATAAGTATG CACCTTTAAAATTGCAGAGTTCTCCTGTCATGCCTCTGAATTCAAACTCAAGCTCAGTTTCTAACCCGTCTACACCTTGGCTTTCAGCTGAACGATTTGA TTCTGGAGACGGTCATGCATATTCTACAGCCGAGAAAGATCTTGTAGATCCTGGGAGTTTGACTGTCAACCATCATCAATTGAGGATTCACGATATCAAC ACGCTTGAATGGGATGACCTGGTGTCAAGTGATCCTAATAATCTGATAACCTGTGGAGATAATAGCTCCTACCTTAACAAGCAGAACCAGGTTGCTCTGA ATGGGGCTGCTAGTTACCACAATGCTTCCCTTCCTGCCTCTAACATATCTGAGGGCAATAGCCCTATAAACCAAGCAATTGGCCCTTATGTGAACAGTGG TACCACTTTCTACAGTGCCCCAGCTGGTACCTATAGTCAGATATCTAATCTCCAGCTAAATTCAAACACGCAAAGTATACACTATCAGACTATGGGCCTT GATTCTTCACTGGACAACTTAATTACTGATGGTTTGCAAAGTGAGGAAAGTTCTACAAAGTGGAACAATGATGCAATGGCCACATCTACGGCCTCTGTAG AAGATCATTTCTTTGAACCTTCTATCTCACCCGGTGACGGGTCATCTGCTTCTCCAGCAATTGGTCCTGGTCAATATTCTGTAGAAGGGTACTCATTTGT CATAACCGATGTCTCACATGCATGGGCCTTTTCAACTGAGACAACAAAGATTCTTGTCACTGGTTATTTTGATGAGCAGTCTCTGCATCTGGCAAACTCC AGTCTGCTTTGTGTTTGTGGTGATGATTGCATTTCTACTGAAGTTGTCCAGTCTGGAGTATATCGCTGTTACTTACCTCCACATTCCCCTGGATTAGTTA ACCTTTGTCTCAGTTTGGATGGCTGTAAACCACTCAGCCAAATCGTGAGTTTTGAGTACCGCGAGTCTGCACATAATGGTGATGATGTGGTTTCGAAAGA CGAAAGCTCCACGTGGGAGCGATTTCATCTCCAAACACGGCTTGCTTATTTGCTTCTATCTACTTCCAAGACCCTCAACCTGCTACGTAGTAAGGTGTCC CCTAGTAAACTGAAGGAGGCTGATCACTTTCAGTTCTCTCTAACATTGCCAAGTCCCTCCATGTTCAGTGAGAAAATGGTGGCAGTTCTATTATCGTCAG GGACAAAGCCGAACTTGGTTACCCACCCAACTGCAGAAAATCCCGGTGGACTTACTCCTGCCGATATTGCAACTCAGAGAGGATACGAAGGCTTGGCAGC TTATCTATCCGAAAAAGCTCTAGTATCACATTTCAACGATATGTCCATAGCAGGAAACGTCTGTGGTGAATTACAACCCACTGAACCCATAATTGGTGCT GAAAACCTGAGCGAGGAAGAGGTCTACCTAAAAGATACTTTGGCCGCTTACCGGACGGCAGCTGATGCTGCCTCTCGTATACAGGAAGCGTTCAGGGAGC GGTCGATGAAGTTACAAGCCAAAGTAGTTGAAAGTTCAAACCCGGAGGCTGAAGCACGCAGCATAGTTGCTGCGATGAAGATTCAACATGCTTTCCGTAA CTACGAGTCCAAGAAGAAGATGGCAGCTGTTGCTCAAATCCAGCATAGGTTCAGAACTTGGAAAATGCGGAGAGAGTTCCTCACTCTCCGCCGTCACGCC ATTAAAATTCAAGCGGCATTCAGGGGGTTGAGAGTGAGGAAGCATTACAGCAAGATCCTCTGGTCAGTCGGAGTGGTCGAGAAAGCAGTCCTACGGTGGC GTCTCAAGAGAAAAGGCCTCCGGGGGCTTAAAGTGAACGATGCGATCCAAGTAGACGAGCAGCAGCATACAAGCGACATAGAAGAGGAAGAAGGATTCTT CAAAGCCAGCAGAAAACAGGCGGAGCAGCGGGTGGAGAGAGCCGTCGTAACAGTTCAAGCTATGTTCCGTTCCAAGAAGGCTCAAGTCGAGTATCAAAGG ATGAAATCGGCATATAACCAAGCCTCGGTATGTGTTCAAACTCTGAACCATTACAATGATTTTGACAACTTGCATTCCCTTCTGTTTTTATTAGGAGTTT GGTTAGATAAATCAATTAACCGGCCAACTTCTGCCACGGTTAAGCTAAAATAA
AA sequence Show only first row Show all	>Lus10041126 pacid=23180010 polypeptide=Lus10041126 locus=Lus10041126.g ID=Lus10041126.BGIv1.0 annot-version=v1.0 MATDFPGQLLGSEIHGFHNLQDLDAGKVLEEAKSRWLRPNEIHAILCNPKYFTVFVKPVNLPKSGTIVLFDRKMLRNFRKDGYRWKKKRDGKTIKEAHEH LKVGTEERIHVYYAHGEDNQTFVRRCYWLLDKYAPLKLQSSPVMPLNSNSSSVSNPSTPWLSAERFDSGDGHAYSTAEKDLVDPGSLTVNHHQLRIHDIN TLEWDDLVSSDPNNLITCGDNSSYLNKQNQVALNGAASYHNASLPASNISEGNSPINQAIGPYVNSGTTFYSAPAGTYSQISNLQLNSNTQSIHYQTMGL DSSLDNLITDGLQSEESSTKWNNDAMATSTASVEDHFFEPSISPGDGSSASPAIGPGQYSVEGYSFVITDVSHAWAFSTETTKILVTGYFDEQSLHLANS SLLCVCGDDCISTEVVQSGVYRCYLPPHSPGLVNLCLSLDGCKPLSQIVSFEYRESAHNGDDVVSKDESSTWERFHLQTRLAYLLLSTSKTLNLLRSKVS PSKLKEADHFQFSLTLPSPSMFSEKMVAVLLSSGTKPNLVTHPTAENPGGLTPADIATQRGYEGLAAYLSEKALVSHFNDMSIAGNVCGELQPTEPIIGA ENLSEEEVYLKDTLAAYRTAADAASRIQEAFRERSMKLQAKVVESSNPEAEARSIVAAMKIQHAFRNYESKKKMAAVAQIQHRFRTWKMRREFLTLRRHA IKIQAAFRGLRVRKHYSKILWSVGVVEKAVLRWRLKRKGLRGLKVNDAIQVDEQQHTSDIEEEEGFFKASRKQAEQRVERAVVTVQAMFRSKKAQVEYQR MKSAYNQASVCVQTLNHYNDFDNLHSLLFLLGVWLDKSINRPTSATVKLK

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G16150	CAMTA		calmodulin binding;transcripti...		Lus10041126 [exp]	0	1
AT4G39370		UBP27	ubiquitin-specific protease 27...		Lus10033528 [exp]	3.5	0.9123
AT1G31480		SGR2	shoot gravitropism 2 (SGR2) (....		Lus10003520 [exp]	3.7	0.9004
AT5G03330			Cysteine proteinases superfami...		Lus10026525 [exp]	5.7	0.9221
AT5G52210		ATGB1, ATARLB1	GTP-binding protein 1 (.1.2)		Lus10027446 [exp]	12.0	0.9119
AT4G21380		ARK3	receptor kinase 3 (.1)		Lus10019061 [exp]	13.9	0.8852
AT2G02800		Kin2, APK2B	protein kinase 2B (.1.2)		Lus10021489 [exp]	14.5	0.9184
AT5G46550			DNA-binding bromodomain-contai...		Lus10002784 [exp]	15.7	0.9115
AT1G19270		DA1	DA1 (.1)		Lus10018789 [exp]	17.2	0.8843
AT2G32230		PRORP1	proteinaceous RNase P 1 (.1)		Lus10014928 [exp]	18.5	0.9054
AT4G02715			unknown protein		Lus10014679 [exp]	24.3	0.8660

Compare expression of checked genes

Lus10041126 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.