Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G02080 320 / 3e-112 ASAR1, ATSARA1C, ATSAR2 secretion-associated RAS super family 2 (.1) AT1G56330 313 / 9e-110 ATSAR1B, ATSAR1, SAR1, ATSARA1B ARABIDOPSIS THALIANA SECRETION-ASSOCIATED RAS 1B, secretion-associated RAS 1B (.1) AT3G62560 311 / 5e-109 Ras-related small GTP-binding family protein (.1) AT1G09180 292 / 2e-101 ATSARA1A, ATSAR1 SECRETION-ASSOCIATED RAS 1, secretion-associated RAS super family 1 (.1) AT1G02620 156 / 8e-49 Ras-related small GTP-binding family protein (.1) AT2G24765 62 / 4e-12 ARF3, ARL1, ATARL1 ARF-LIKE 1, ADP-ribosylation factor 3 (.1.2) AT3G22950 59 / 8e-11 ATARFC1 ADP-ribosylation factor C1 (.1.2) AT2G47170 56 / 2e-09 ARF1A1C, ARF1 Ras-related small GTP-binding family protein (.1) AT3G49870 55 / 2e-09 ATARLA1C ADP-ribosylation factor-like A1C (.1) AT3G62290 55 / 3e-09 ATARFA1E ADP-ribosylation factor A1E (.1.2.3)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10036456 [exp] 330 / 2e-116 AT4G02080 386 / 3e-139 secretion-associated RAS super family 2 (.1) Lus10037739 [exp] 321 / 6e-113 AT4G02080 389 / 2e-140 secretion-associated RAS super family 2 (.1) Lus10016874 [exp] 315 / 2e-110 AT4G02080 383 / 7e-138 secretion-associated RAS super family 2 (.1) Lus10010926 [exp] 315 / 3e-110 AT4G02080 385 / 9e-139 secretion-associated RAS super family 2 (.1) Lus10031408 [exp] 315 / 3e-110 AT4G02080 385 / 9e-139 secretion-associated RAS super family 2 (.1) Lus10006632 [exp] 59 / 1e-10 AT3G22950 358 / 2e-128 ADP-ribosylation factor C1 (.1.2) Lus10039392 [exp] 59 / 1e-10 AT3G22950 355 / 2e-127 ADP-ribosylation factor C1 (.1.2) Lus10014991 [exp] 57 / 1e-09 AT5G52210 320 / 1e-112 GTP-binding protein 1 (.1.2) Lus10038871 [exp] 57 / 2e-09 AT5G52210 326 / 3e-113 GTP-binding protein 1 (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G141900 [exp] 318 / 2e-111 AT4G02080 384 / 3e-138 secretion-associated RAS super family 2 (.1) Potri.008G107800 [exp] 315 / 2e-110 AT4G02080 338 / 4e-120 secretion-associated RAS super family 2 (.1) Potri.005G019100 [exp] 313 / 1e-109 AT4G02080 357 / 1e-127 secretion-associated RAS super family 2 (.1) Potri.013G009900 [exp] 309 / 4e-108 AT4G02080 308 / 3e-108 secretion-associated RAS super family 2 (.1) Potri.013G010000 [exp] 309 / 5e-108 AT4G02080 308 / 3e-108 secretion-associated RAS super family 2 (.1) Potri.005G015400 [exp] 303 / 1e-105 AT4G02080 299 / 7e-105 secretion-associated RAS super family 2 (.1) Potri.018G096077 [exp] 61 / 2e-11 AT2G24765 354 / 8e-127 ARF-LIKE 1, ADP-ribosylation factor 3 (.1.2) Potri.006G267800 [exp] 61 / 2e-11 AT2G24765 333 / 8e-119 ARF-LIKE 1, ADP-ribosylation factor 3 (.1.2) Potri.006G171500 [exp] 61 / 2e-11 AT2G24765 353 / 8e-127 ARF-LIKE 1, ADP-ribosylation factor 3 (.1.2) Potri.018G013700 [exp] 60 / 5e-11 AT2G24765 336 / 6e-120 ARF-LIKE 1, ADP-ribosylation factor 3 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0023 [flax] [poplar] P-loop_NTPase PF00025 [flax] [poplar] Arf ADP-ribosylation factor family
Representative CDS sequence Show only first row Show all	>Lus10041127 pacid=23179834 polypeptide=Lus10041127 locus=Lus10041127.g ID=Lus10041127.BGIv1.0 annot-version=v1.0 ATGTTCCTCTTCGACTGGTTCTACGGAGTTCTGGCATCTCTCGGGCTATGGCAGAAAGAGGCCAAGATCCTCTTCTTAGGCCTCGACAATGCCGGCAAGA CCACCCTCCTTCACATGCTCAAAGACGAGAGACTAGTGCAACACCAGCCTACGCAGCACCCGACGTCGGAGGAGCTGAGTATAGGGAAGATCAAGTTCAA GGCCTTTGATTTAGGCGGCCACCAGATCGCGCGCCGAGTCTGGAAAGACTACTATGCCAAGCTAGCATTTGGTGAACTCATTATACTCGTTGAATTATGT GATTTTTCGCTAGCTACAGCTAGCATCTTCTGTAAAGCTAGTTCCTTTAGCTCAACCTGCACCATACCCGTGGATGCAGTGGTCTACCTTGTGGATGCAT ACGACAAGGAGAGGTTTGCAGAGTCCAAGAAGGAGTTGGACGCACTCCTATCGGATGAATCCTTGGCCAGCGTCCCGTTTTTAATTCTCGGAAACAAGAT TGATATCCCTTACGCAGCCTCCAAGGACGAGCTCCGGTACCATCTAGGGCTCAGCAATTTCACTACCGGAAAGGGGAGAGTGAATCTCGCGGACTCCAAT GTCCGGGCCCTCGAGGTTTTCATGTGCAGCATTGTGCGCAAGATGGGCTACGGCGATGGTTTCAAGTGGCTATCTCAGTACATCAAGTAG
AA sequence Show only first row Show all	>Lus10041127 pacid=23179834 polypeptide=Lus10041127 locus=Lus10041127.g ID=Lus10041127.BGIv1.0 annot-version=v1.0 MFLFDWFYGVLASLGLWQKEAKILFLGLDNAGKTTLLHMLKDERLVQHQPTQHPTSEELSIGKIKFKAFDLGGHQIARRVWKDYYAKLAFGELIILVELC DFSLATASIFCKASSFSSTCTIPVDAVVYLVDAYDKERFAESKKELDALLSDESLASVPFLILGNKIDIPYAASKDELRYHLGLSNFTTGKGRVNLADSN VRALEVFMCSIVRKMGYGDGFKWLSQYIK

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G02080		ASAR1, ATSARA1C...	secretion-associated RAS super...		Lus10041127 [exp]	0	1
AT1G34130		STT3B	staurosporin and temperature s...		Lus10017990 [exp]	7.5	0.8779
AT5G10840			Endomembrane protein 70 protei...		Lus10042415 [exp]	12.2	0.8638
AT1G63000		UER1, NRS/ER	"UDP-4-KETO-6-DEOXY-D-GLUCOSE-...		Lus10006719 [exp]	16.1	0.8599
AT5G54440		CLUB, AtTRS130	CLUB (.1)		Lus10021681 [exp]	16.4	0.8520
AT1G26850			S-adenosyl-L-methionine-depend...		Lus10030479 [exp]	17.7	0.8438
AT5G18280		ATAPY2	apyrase 2 (.1.2)		Lus10042528 [exp]	19.6	0.8482
AT5G42020		BIP2, BIP	luminal binding protein, Heat ...		Lus10032430 [exp]	22.0	0.8503
AT2G04280			unknown protein		Lus10041091 [exp]	23.1	0.8339
AT1G61790			Oligosaccharyltransferase comp...		Lus10007647 [exp]	25.8	0.8505
AT5G18280		ATAPY2	apyrase 2 (.1.2)		Lus10006546 [exp]	26.8	0.8427

Compare expression of checked genes

Lus10041127 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.