Plant FIBer expression Database

Lus10041130 [FLAX]


External link
JGI Phytozome v13
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT4G14600 189 / 3e-63 Target SNARE coiled-coil domain protein (.1)
AT1G29060 164 / 2e-53 Target SNARE coiled-coil domain protein (.1)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10008723
[exp]
236 / 2e-81 AT4G14600 211 / 6e-72 Target SNARE coiled-coil domain protein (.1)
Lus10020947
[exp]
234 / 1e-80 AT4G14600 209 / 3e-71 Target SNARE coiled-coil domain protein (.1)
Lus10036461
[exp]
157 / 1e-50 AT4G14600 109 / 5e-32 Target SNARE coiled-coil domain protein (.1)
Poplar homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.005G159600
[exp]
201 / 5e-68 AT4G14600 194 / 3e-65 Target SNARE coiled-coil domain protein (.1)
Potri.002G102400
[exp]
192 / 1e-64 AT4G14600 163 / 5e-53 Target SNARE coiled-coil domain protein (.1)
PFAM info
Representative CDS sequence
>Lus10041130 pacid=23179950 polypeptide=Lus10041130 locus=Lus10041130.g ID=Lus10041130.BGIv1.0 annot-version=v1.0
ATGGCAGCGAGCTCCAGCCGATCACGTCCCTTCCACGGTGGCGCTGCTCCGTTCCGGTCCAGTGATGGACTCAGTACGAGGCAGGCAGCAAGCTCGGACG
AAATACAGCTCCGGATTGATCCGATGAGCTCCGATTTCGACGACGAGATAAGCAGTCTCCGTTCTCAAGTCAGCCAGCTCAGGAATGTGGCTCAGGAGAT
AGAGACGGAAGCAAAATTCCAGAATGATTTTGTAGATCAGTTGCAAATGACGGTGATCAAAGCTCAAGCAAGCGTGAAGAACAACATAAGGAAACTAAAC
ATGAGCATGGTTAAGAACGGACCGAACCATATAGTGCAAGTAGTTCTCTTCGCACTCTTCTGCTTCATGGTAGTCTACCTATGGTCCAAGGTATCCAGAA
GATGA
AA sequence
>Lus10041130 pacid=23179950 polypeptide=Lus10041130 locus=Lus10041130.g ID=Lus10041130.BGIv1.0 annot-version=v1.0
MAASSSRSRPFHGGAAPFRSSDGLSTRQAASSDEIQLRIDPMSSDFDDEISSLRSQVSQLRNVAQEIETEAKFQNDFVDQLQMTVIKAQASVKNNIRKLN
MSMVKNGPNHIVQVVLFALFCFMVVYLWSKVSRR

DESeq2's median of ratios [FLAX]

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Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol HYPR_s2_CTRR_s2_FoxR_s4_CTRR_s4_FoxR_r1_CTRR_r1_FoxR_r3_CTRR_r3_FoxR_r1s2_CTRR_r1s2_FoxR_r3s2_CTRR_r3s2_FoxR_s6_CTRR_s6_Al4R_s6_Al12R_s6_Al24R_s8_CTRR_s8_Al4R_s8_Al12R_s8_Al24R_r5_CTRR_r5_Al4R_r5_Al12R_r5_Al24R_r7_CTRR_r7_Al4R_r7_Al12R_r7_Al24LEAF_NLEAF_PLEAF_NPKSAMAR_BetAR_rdfcPARTOP_BetTOP_rdfiFIBaiFIBbMID_BetMID_rdftFIBatFIB_GrtFIB_LitFIB_BitFIBbtFIBb_PUL8tFIBb_PUL24tFIBb_PUL96tFIBb_OPP8tFIBb_OPP24tFIBb_OPP96sXYLasXYLbsXYLb_PUL8sXYLb_PUL24sXYLb_PUL96sXYLb_OPP8sXYLb_OPP24sXYLb_OPP96
AT4G14600 Target SNARE coiled-coil domai... Lus10041130
[exp]
0 1
AT5G19151 unknown protein Lus10034040
[exp]
1.4 0.7695
AT4G14500 Polyketide cyclase/dehydrase a... Lus10021883
[exp]
9.6 0.7709
AT3G12350 F-box family protein (.1.2) Lus10010607
[exp]
17.0 0.7317
AT4G14500 Polyketide cyclase/dehydrase a... Lus10041166
[exp]
17.2 0.7232
AT2G26530 AR781 Protein of unknown function (D... Lus10006479
[exp]
20.5 0.7431
AT5G54490 PBP1 pinoid-binding protein 1 (.1) Lus10036734
[exp]
23.1 0.7462
AT3G44670 Disease resistance protein (TI... Lus10015465
[exp]
26.6 0.7208
AT5G53940 Yippee family putative zinc-bi... Lus10013992
[exp]
31.4 0.7021
AT1G20920 P-loop containing nucleoside t... Lus10025525
[exp]
35.9 0.7003
AT1G78380 GST8, ATGSTU19 GLUTATHIONE TRANSFERASE 8, A. ... Lus10042470
[exp]
37.6 0.7313

Lus10041130 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.