Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G33590 438 / 3e-151 unknown protein AT4G33600 429 / 9e-148 unknown protein AT3G18180 45 / 6e-05 Glycosyltransferase family 61 protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10036462 [exp] 425 / 9e-150 AT4G33590 218 / 5e-69 unknown protein Lus10001351 [exp] 387 / 5e-131 AT4G33590 519 / 0.0 unknown protein Lus10036463 [exp] 265 / 7e-88 AT4G33590 162 / 3e-48 unknown protein Lus10018046 [exp] 49 / 4e-06 AT3G10320 530 / 0.0 Glycosyltransferase family 61 protein (.1) Lus10035441 [exp] 43 / 0.0005 AT2G41640 560 / 0.0 Glycosyltransferase family 61 protein (.1.2) Lus10018048 [exp] 43 / 0.0005 AT2G41640 569 / 0.0 Glycosyltransferase family 61 protein (.1.2) Lus10031057 [exp] 42 / 0.0007 AT2G41640 543 / 0.0 Glycosyltransferase family 61 protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G102300 [exp] 566 / 0 AT4G33600 464 / 3e-161 unknown protein Potri.007G112500 [exp] 447 / 2e-154 AT4G33590 564 / 0.0 unknown protein Potri.017G048300 [exp] 437 / 2e-150 AT4G33600 573 / 0.0 unknown protein
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10041131 pacid=23179612 polypeptide=Lus10041131 locus=Lus10041131.g ID=Lus10041131.BGIv1.0 annot-version=v1.0 ATGGATGAAACAAAACCAAGCTCCAAGCTCAGTTCCAAAATCGTACTAGCCACCTTCATTTCCCTCACTCTGCTCCTTCTCAGCTTTCTTCAGCTACAAG CTTCCCCTTTCTACTTATCATTCCGAAATCCGTCGAGCATATCCGATAACAACGATGGTTTATCAACTCAGAAGCTCCGAGACTCTGTCACTTTCCTCCC ACTGAAAGACCGCGGGTTCGCGGACACCGCCATGGAAGGCAACACTTGGTTCATGAGCTCGCTGGTCGACATTCAGGAAGTCAACGAGTCGGAATACCTC TACTTCCCTTCGGCAACATCAAAGGGAAGGCTTCTATGCATTCGGGGTAATAACACCAAAGACGGTGCCAAGAATTCCTACGCAATGGCCTGGCCAGAAG CTCTCCCCGAAAATGCAAGGCTTATGCGAGGCCTGACATTCGTGTCTGACACTTACTTCGACTATGTCAACCTGTGGCATGGTTTGACTGCAATGGTGCC TTTTGTAGGATGGTCGATGAAGAACGAATGCTCCACTCCGACCAGGTGGGTGCTGTTCCATTGGGGAGAGTTTCGGTTCGGAATTGGGTCGTGGCTAGAG AAACTCCTGGAAGCTAACTATGGCGAGGTTAAGTTAGAAGGGAGCAATGATGAGACGTACTGTTTCGAGAAGGCAGTGGTGATGAGGCACAATATGGGGG GCATCGGGGTGGAGAAGACGCTTCGAGTTTACGATCAGCTGAGATGCAGAGCACGGAGGTACTGTGGGATTAATCCTGATCCTGTTGCTTTCAGCAACAG GATCAGGCTGACATTGCTAATGAGGAAAGGCTCGAGATCATTTAAAGATCCGGAAGCTGTGAGCGAGATATTCGCCAAGGAATGTGCGAAAATCGAAGGC TGTGTTCTGAAAGTGGTTCAGTCGGAGGAACTAAGAAGCTTCTGTGACCAAGTAAGGACAATGAAGGAAACAGATATTGTAGCATCGCCACATGGAGCTC AGTTGACGAACATGATGTTCATGGACCGAGGGAGCAGCGTGATGGAGTTTTTTCCGAAGGGATGGTTCGAGCTAGCCGGAACCGGTCAGTATGTCTTCCA CTGGATGGCTGGGCAATCCGGGATGATCCACCAGGGATCGTGGTGGGAGCCTCTTTCGAAACTTGAATGCCCGAAACCTGAGAATGAGCTGGAATGTTTC TTCTTCTATAAAGATGGTCGGGTGGGTCATAACGAGACATATTTGACGGGATGGGCGAGAAGGGTGATCAATCAAGTTAGAGCTGGAAAGATGGAAGAGA GAGCAAAGGCGATCTTACGTACCGGCTCGGATGATGGCTGTGTCTGCTAA
AA sequence Show only first row Show all	>Lus10041131 pacid=23179612 polypeptide=Lus10041131 locus=Lus10041131.g ID=Lus10041131.BGIv1.0 annot-version=v1.0 MDETKPSSKLSSKIVLATFISLTLLLLSFLQLQASPFYLSFRNPSSISDNNDGLSTQKLRDSVTFLPLKDRGFADTAMEGNTWFMSSLVDIQEVNESEYL YFPSATSKGRLLCIRGNNTKDGAKNSYAMAWPEALPENARLMRGLTFVSDTYFDYVNLWHGLTAMVPFVGWSMKNECSTPTRWVLFHWGEFRFGIGSWLE KLLEANYGEVKLEGSNDETYCFEKAVVMRHNMGGIGVEKTLRVYDQLRCRARRYCGINPDPVAFSNRIRLTLLMRKGSRSFKDPEAVSEIFAKECAKIEG CVLKVVQSEELRSFCDQVRTMKETDIVASPHGAQLTNMMFMDRGSSVMEFFPKGWFELAGTGQYVFHWMAGQSGMIHQGSWWEPLSKLECPKPENELECF FFYKDGRVGHNETYLTGWARRVINQVRAGKMEERAKAILRTGSDDGCVC

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G33590			unknown protein		Lus10041131 [exp]	0	1
AT2G45430	AT-hook	AHL22	AT-hook motif nuclear-localize...		Lus10006664 [exp]	1.4	0.9745
AT3G12120		FAD2	fatty acid desaturase 2 (.1.2)		Lus10021045 [exp]	2.8	0.9630
AT3G05390			unknown protein		Lus10029907 [exp]	3.2	0.9723
AT3G19430			late embryogenesis abundant pr...		Lus10021837 [exp]	4.5	0.9686
AT3G08030			Protein of unknown function, D...		Lus10016393 [exp]	4.5	0.9705
AT3G15730		PLDALPHA1	phospholipase D alpha 1 (.1)		Lus10039806 [exp]	4.6	0.9710
AT4G23740			Leucine-rich repeat protein ki...		Lus10027568 [exp]	5.8	0.9530
AT5G62620			Galactosyltransferase family p...		Lus10004256 [exp]	6.2	0.9513
AT4G25320	AT-hook		AT hook motif DNA-binding fami...		Lus10031118 [exp]	6.9	0.9659
AT3G51930			Transducin/WD40 repeat-like su...		Lus10039568 [exp]	7.1	0.9492

Compare expression of checked genes

Lus10041131 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.