Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G12680 587 / 0 PEPKR2 phosphoenolpyruvate carboxylase-related kinase 2 (.1) AT1G76040 262 / 2e-81 CPK29 calcium-dependent protein kinase 29 (.1.2) AT1G12580 259 / 8e-81 PEPKR1 phosphoenolpyruvate carboxylase-related kinase 1 (.1) AT2G38910 248 / 9e-76 CPK20 calcium-dependent protein kinase 20 (.1) AT1G35670 243 / 5e-75 CPK11, ATCDPK2, ATCPK11 calcium-dependent protein kinase 2 (.1) AT2G35890 243 / 1e-74 CPK25 calcium-dependent protein kinase 25 (.1) AT4G09570 243 / 1e-74 CPK4, ATCPK4 calcium-dependent protein kinase 4 (.1) AT1G50700 242 / 3e-74 CPK33 calcium-dependent protein kinase 33 (.1) AT4G35310 243 / 4e-74 CPK5, ATCPK5 calmodulin-domain protein kinase 5 (.1) AT3G57530 242 / 7e-74 ATCPK32, CDPK32, CPK32 calcium-dependent protein kinase 32 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10036464 [exp] 869 / 0 AT1G12680 607 / 0.0 phosphoenolpyruvate carboxylase-related kinase 2 (.1) Lus10015009 [exp] 258 / 2e-80 AT1G12580 549 / 0.0 phosphoenolpyruvate carboxylase-related kinase 1 (.1) Lus10038889 [exp] 255 / 3e-79 AT1G12580 555 / 0.0 phosphoenolpyruvate carboxylase-related kinase 1 (.1) Lus10008958 [exp] 246 / 3e-76 AT5G04870 877 / 0.0 calcium dependent protein kinase 1 (.1) Lus10017251 [exp] 246 / 7e-76 AT1G76040 807 / 0.0 calcium-dependent protein kinase 29 (.1.2) Lus10028862 [exp] 248 / 1e-75 AT5G04870 940 / 0.0 calcium dependent protein kinase 1 (.1) Lus10029547 [exp] 245 / 2e-75 AT1G35670 790 / 0.0 calcium-dependent protein kinase 2 (.1) Lus10006777 [exp] 244 / 5e-75 AT4G04720 764 / 0.0 calcium-dependent protein kinase 21 (.1) Lus10021531 [exp] 243 / 3e-74 AT3G20410 831 / 0.0 calmodulin-domain protein kinase 9 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G251500 [exp] 627 / 0 AT1G12680 662 / 0.0 phosphoenolpyruvate carboxylase-related kinase 2 (.1) Potri.017G048400 [exp] 500 / 1e-175 AT1G12680 471 / 7e-164 phosphoenolpyruvate carboxylase-related kinase 2 (.1) Potri.007G112400 [exp] 499 / 3e-175 AT1G12680 492 / 4e-172 phosphoenolpyruvate carboxylase-related kinase 2 (.1) Potri.012G134600 [exp] 257 / 8e-80 AT1G12580 569 / 0.0 phosphoenolpyruvate carboxylase-related kinase 1 (.1) Potri.013G112500 [exp] 255 / 4e-79 AT1G35670 815 / 0.0 calcium-dependent protein kinase 2 (.1) Potri.003G120800 [exp] 252 / 3e-78 AT1G12580 605 / 0.0 phosphoenolpyruvate carboxylase-related kinase 1 (.1) Potri.019G083200 [exp] 250 / 2e-77 AT4G09570 835 / 0.0 calcium-dependent protein kinase 4 (.1) Potri.010G244800 [exp] 249 / 2e-76 AT5G04870 899 / 0.0 calcium dependent protein kinase 1 (.1) Potri.015G136900 [exp] 248 / 3e-76 AT1G12580 587 / 0.0 phosphoenolpyruvate carboxylase-related kinase 1 (.1) Potri.006G200600 [exp] 248 / 1e-75 AT5G04870 842 / 0.0 calcium dependent protein kinase 1 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [flax] [poplar] PKinase PF00069 [flax] [poplar] Pkinase Protein kinase domain
Representative CDS sequence Show only first row Show all	>Lus10041132 pacid=23179555 polypeptide=Lus10041132 locus=Lus10041132.g ID=Lus10041132.BGIv1.0 annot-version=v1.0 ATGAGGAAAAAGAGGAAAGGTGGAGAAAGTGATGATTTGACGTCCTATTACTCATTGGAGGATTACGATAGGATAAACAAGAAGTGTAAAGAGGTTGATG ATGATGATGCAAAAGGCAAAGAGCCGCCAATCAATTCATTGAAAAGCAGGCTTGCAGGGGTTGCAACTGCACCACCTTCAACTTCTTCATTGGTATCTCC AGGGAGAGGGCTCAAGAGAAAGATAGGGTGCATCGAAGTTACGACTCAAACCGGTAGGAAGAACAGGATCGAAGACGACTATACCTTTGGCGAGACCCTA GGGAAAGGGAAGTTCGGTTCCGTTTCGTTGTGTAGGTCGAGAGCATCCGGGGAGGAGTTTGCTTGCAAGACGTTGAAGAAGGGGGAAGAGACTGTTCACA GAGAGGTGGAGATAATGCAGCATTTGTCCGGACATCCTGGTGTTGTGACATTGCACGCTGTGTATGAAGAATTGGAGTTCTTCCACTTAGTGATGGAGTT CTGCTCCAAAGGGAGATTGATTGATCAGATGGTTAAAGAGGATCAATACTCGGAACAACGGGCTGCCAATGTGTTCAAGGATGTGATGTTGGTGATCAAG TATTGCCATGAGATGGGTGTTGTTCATAGAGATATTAAGCCGGAAAATATACTTCTTGTTAGCTCGGGGAAGATCAAGCTCGCTGATTTCGGCCTTGCCA TGAGGATTTCGAACGGTCAGAAGCTATCCGGTTTAGCAGGAAGTCCGGCATATGTTGCACCGGAAGTTCTGCAAGGAAACTATTCCGAGGAGGTTGATAT ATGGAGTGCTGGTGTTCTGCTACACGCCCTCTTGACTGGTGTTCTTCCTTTTCAAGGGGACTCGTTGGAATCGGTTTTCCAGGCGATCAAATCCGCGAAG CTTGATTTCCAGACAGGGATATGGGATTCGGTGTCCAAACCCGCACGGGACTTACTCGGAAGAATGTTGGCTAGGGATGTTTCTGCTCGGATAACTGCAG ATGAAGCACTGAGGCATCCATGGGTGTTATTCTACACGGATCGCACGTTGAGACCATTATCCTTCAAGTCGAAACTAAGGAACGATCAGGGTCGTCCTGA TTCAACTCAGGAGGTGATTGCTGCACCTGAATCGGCAGAACCGTGTAGAAAGTGGTGGCGGAAGCATGCAGTTTTCGATAGTTTAAACTGCAAGTCTGAA GCAGGGGAGGACGAGGTGGAGGAAGAAGAATGCGAATTGGTTGTGGATGCATTGGCGGTGGCGATGTCGCAGGTGAAGATCTCGGAGCCGAAGAGAAGCA GGCTGTGTAGCCCTGCAAGGCCGATAGAACCGCAATGTTCAGCTAACATCACAGCCAGCAGCACCCTTTGTAGAGCTTTCTGA
AA sequence Show only first row Show all	>Lus10041132 pacid=23179555 polypeptide=Lus10041132 locus=Lus10041132.g ID=Lus10041132.BGIv1.0 annot-version=v1.0 MRKKRKGGESDDLTSYYSLEDYDRINKKCKEVDDDDAKGKEPPINSLKSRLAGVATAPPSTSSLVSPGRGLKRKIGCIEVTTQTGRKNRIEDDYTFGETL GKGKFGSVSLCRSRASGEEFACKTLKKGEETVHREVEIMQHLSGHPGVVTLHAVYEELEFFHLVMEFCSKGRLIDQMVKEDQYSEQRAANVFKDVMLVIK YCHEMGVVHRDIKPENILLVSSGKIKLADFGLAMRISNGQKLSGLAGSPAYVAPEVLQGNYSEEVDIWSAGVLLHALLTGVLPFQGDSLESVFQAIKSAK LDFQTGIWDSVSKPARDLLGRMLARDVSARITADEALRHPWVLFYTDRTLRPLSFKSKLRNDQGRPDSTQEVIAAPESAEPCRKWWRKHAVFDSLNCKSE AGEDEVEEEECELVVDALAVAMSQVKISEPKRSRLCSPARPIEPQCSANITASSTLCRAF

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G12680		PEPKR2	phosphoenolpyruvate carboxylas...		Lus10041132 [exp]	0	1
AT3G59910			Ankyrin repeat family protein ...		Lus10010581 [exp]	1.0	0.9155
AT1G80400			RING/U-box superfamily protein...		Lus10023112 [exp]	1.4	0.8914
AT4G33630		EX1	EXECUTER1, Protein of unknown ...		Lus10020435 [exp]	1.7	0.8639
AT1G12450			SNARE associated Golgi protein...		Lus10006674 [exp]	2.8	0.8622
AT4G16580			Protein phosphatase 2C family ...		Lus10010797 [exp]	3.2	0.8480
AT4G37440			unknown protein		Lus10014864 [exp]	7.3	0.8377
AT1G57790			F-box family protein (.1)		Lus10017027 [exp]	7.7	0.8153
AT5G64210		AOX2	alternative oxidase 2 (.1)		Lus10020523 [exp]	8.5	0.8258
AT3G58030			RING/U-box superfamily protein...		Lus10016255 [exp]	9.2	0.8342
AT5G26600			Pyridoxal phosphate (PLP)-depe...		Lus10031445 [exp]	10.5	0.8200

Compare expression of checked genes

Lus10041132 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.