Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G09120 167 / 3e-48 RING/U-box superfamily protein (.1) AT1G35330 166 / 6e-48 RING/U-box superfamily protein (.1) AT2G35000 157 / 4e-44 ATL9 Arabidopsis toxicos en levadura 9, RING/U-box superfamily protein (.1) AT5G27420 150 / 1e-41 CNI1, ATL31 carbon/nitrogen insensitive 1 (.1) AT4G09130 149 / 4e-41 RING/U-box superfamily protein (.1) AT3G05200 148 / 1e-40 ATL6 RING/U-box superfamily protein (.1) AT1G22500 145 / 1e-39 AtATL15 Arabidopsis thaliana Arabidopsis toxicos en levadura 15, RING/U-box superfamily protein (.1) AT1G72200 145 / 3e-39 RING/U-box superfamily protein (.1) AT4G40070 139 / 7e-38 RING/U-box superfamily protein (.1) AT2G34990 136 / 4e-37 RING/U-box superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10036466 [exp] 537 / 0 AT1G72200 186 / 6e-55 RING/U-box superfamily protein (.1) Lus10029794 [exp] 263 / 7e-84 AT1G72200 219 / 1e-66 RING/U-box superfamily protein (.1) Lus10004460 [exp] 176 / 5e-51 AT3G05200 307 / 6e-102 RING/U-box superfamily protein (.1) Lus10000333 [exp] 171 / 5e-49 AT3G05200 309 / 2e-102 RING/U-box superfamily protein (.1) Lus10031515 [exp] 162 / 2e-46 AT3G05200 232 / 1e-73 RING/U-box superfamily protein (.1) Lus10015167 [exp] 159 / 2e-45 AT3G05200 226 / 2e-71 RING/U-box superfamily protein (.1) Lus10035368 [exp] 109 / 8e-27 AT4G17920 194 / 2e-60 RING/U-box superfamily protein (.1) Lus10029949 [exp] 108 / 8e-27 AT3G05200 171 / 1e-50 RING/U-box superfamily protein (.1) Lus10030972 [exp] 105 / 3e-25 AT4G17920 191 / 6e-59 RING/U-box superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G036800 [exp] 171 / 2e-49 AT3G05200 261 / 7e-84 RING/U-box superfamily protein (.1) Potri.005G160900 [exp] 172 / 3e-49 AT1G22500 203 / 5e-61 Arabidopsis thaliana Arabidopsis toxicos en levadura 15, RING/U-box superfamily protein (.1) Potri.013G025800 [exp] 171 / 3e-49 AT3G05200 261 / 9e-84 RING/U-box superfamily protein (.1) Potri.001G140900 [exp] 119 / 9e-31 AT4G17920 183 / 3e-56 RING/U-box superfamily protein (.1) Potri.003G093500 [exp] 108 / 4e-27 AT4G17920 186 / 1e-57 RING/U-box superfamily protein (.1) Potri.018G042501 [exp] 103 / 3e-24 AT2G20030 244 / 2e-77 RING/U-box superfamily protein (.1) Potri.006G239500 [exp] 100 / 6e-23 AT2G20030 248 / 1e-78 RING/U-box superfamily protein (.1) Potri.018G085001 [exp] 97 / 5e-22 AT4G28890 290 / 2e-94 RING/U-box superfamily protein (.1) Potri.012G078200 [exp] 94 / 3e-21 AT5G40250 241 / 1e-76 RING/U-box superfamily protein (.1) Potri.015G056800 [exp] 95 / 4e-21 AT5G05810 263 / 8e-85 RING/U-box superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0229 [flax] [poplar] RING PF00097 [flax] [poplar] zf-C3HC4 Zinc finger, C3HC4 type (RING finger)
Representative CDS sequence Show only first row Show all	>Lus10041134 pacid=23179827 polypeptide=Lus10041134 locus=Lus10041134.g ID=Lus10041134.BGIv1.0 annot-version=v1.0 ATGAACATACCTAAACTCGCCGCCGTGTTGTTCTTCTACATGTTTCACCAGGCGGCGGGACAGGCCGGAAACATCTTTTCCACGCCGCCGGCCGCGAAAC AAATATACACCTTGGAAACCCAACTGACCCACATGATGGTAATCATGATTGTCGTCCTCGTAATCGCTCTCCTCTTCATGGGTTCCATCGCCATCTACGC CCGACGCCGGAGATACCTCGCCGGCGAGGACTTCCATTTCGAGCACTTGTACGGCTCCTCCGTTGGACGGTGGTCAATCCGCGAGCCGCCGGGACTTGAC TCGGAGGTCATTCACACGTTTCCGACTTTTCTGTATTCTTCCGTAAAAGGGTTGAAAATCGGGAAAGGCGGGCTCGAATGCGCAATCTGTATAAGCGAGT TCGAGGATGCCGAAACGCTGCGTTTGATACCAAAGTGTAGCCACGTGTTCCATGTGGATTGCATCGATGCGTGGCTCATTTCTAACACGACTTGCCCGGT TTGCAGGGCCGACCTGACTCGATCCGGATCCGACGACCAGCTGGTCTTTGTCTCGGATCAAGAGATGGATCATCACCCGTCTGATGTAGACGATTGTGTT ATTCAAAATGAAAGTGTTAGTGATCATGTCGTTGTGAGTAGTGGCGATCAACTTTCCTACTCGAATGACCAGAAAGGTCGTTCGAGCCGGTGGAGCCTAA TGCAATTGTTCCCAAGGTCGCACTCGACGGGTCATAGTTCGTTGGGAACGGATTTGGAGCGATTCACTCTAAAACTACCGAACGAAGTACGAAATCGGTT AATGAGTACACAACTGAACCGAGCGAAGAGTTGCAGTGTGGTTTTCACTAGAGCGAGGAGCGGAAGGAGAGGTTTTAGGAGCGAGGGTAGCGGGAGCTAT GATCGCAAATTTGACATTGACCTCGAAGATCCATATGTTCGAGGGCAAGGTCTTCCACCTCTTCCACCCAAATTAGGTTATGTAAATACGACGAGTACAA AAAGGGTGACAAGTGGAAAGAATGAGGACTCTAGTGGAAGTGTACCAAGAAGGTCGTCTAAGTCGATTAGATCTTCGTTCGATCGGTTCTTACTTGGACT TGATAGTGGCCATGGTAGCCAAAAACCGATTGGTGAACGGACGATAGATCGGTTGAGACTGGCCGATAGTGAAGTTTAG
AA sequence Show only first row Show all	>Lus10041134 pacid=23179827 polypeptide=Lus10041134 locus=Lus10041134.g ID=Lus10041134.BGIv1.0 annot-version=v1.0 MNIPKLAAVLFFYMFHQAAGQAGNIFSTPPAAKQIYTLETQLTHMMVIMIVVLVIALLFMGSIAIYARRRRYLAGEDFHFEHLYGSSVGRWSIREPPGLD SEVIHTFPTFLYSSVKGLKIGKGGLECAICISEFEDAETLRLIPKCSHVFHVDCIDAWLISNTTCPVCRADLTRSGSDDQLVFVSDQEMDHHPSDVDDCV IQNESVSDHVVVSSGDQLSYSNDQKGRSSRWSLMQLFPRSHSTGHSSLGTDLERFTLKLPNEVRNRLMSTQLNRAKSCSVVFTRARSGRRGFRSEGSGSY DRKFDIDLEDPYVRGQGLPPLPPKLGYVNTTSTKRVTSGKNEDSSGSVPRRSSKSIRSSFDRFLLGLDSGHGSQKPIGERTIDRLRLADSEV

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G72200			RING/U-box superfamily protein...		Lus10041134 [exp]	0	1
AT2G26695			Ran BP2/NZF zinc finger-like s...		Lus10033023 [exp]	3.0	0.7820
AT4G25390			Protein kinase superfamily pro...		Lus10030009 [exp]	7.0	0.6427
AT3G18990	B3	REM39, VRN1	REDUCED VERNALIZATION RESPONSE...		Lus10035637 [exp]	8.1	0.7742
AT2G20770		GCL2	GCR2-like 2 (.1)		Lus10031638 [exp]	9.6	0.7627
AT2G33030		AtRLP25	receptor like protein 25 (.1)		Lus10003462 [exp]	9.7	0.7307
AT5G43400			Uncharacterised conserved prot...		Lus10016990 [exp]	10.7	0.6819
AT3G44160			Outer membrane OMP85 family pr...		Lus10004104 [exp]	11.0	0.7696
					Lus10008005 [exp]	13.0	0.7329
AT5G14610			DEAD box RNA helicase family p...		Lus10035149 [exp]	13.7	0.7474
AT3G55210	NAC	ANAC063	NAC domain containing protein ...		Lus10031639 [exp]	15.0	0.7538

Compare expression of checked genes

Lus10041134 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.