Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G09060 203 / 3e-63 unknown protein AT1G14680 199 / 4e-62 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10036467 [exp] 499 / 9e-180 AT4G09060 271 / 9e-89 unknown protein
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G101400 [exp] 266 / 5e-88 AT4G09060 191 / 4e-58 unknown protein
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10041137 pacid=23179844 polypeptide=Lus10041137 locus=Lus10041137.g ID=Lus10041137.BGIv1.0 annot-version=v1.0 ATGCCCATCGCCGTATCTCATCGCCGTATCCTCCGTCAGTGCATCGTTCTTGACGAGAAGCTACGCGAGAAGGATCAGATCCTTGACCGCGCTAAGGCTG AGGCGACTATGAATGCCGTGGCTTTGAAGAAGTTCGTGGAGGAGAATCAGAAATTGGCAGGGGAGTGCGCCAATCTGGTGGCTCAGTGTAAGAAGTGGGA AAGGGAGTGTACGCTTTACGACAATGACAGGGAGGCTCTGATGGAGTTTGGGAATGAGGCGGATGAGAGAGCGAAGGATGCTGAAATTAGGGTTCACGAG TTGGAAGAGACGCTGCAGCGTATGTCTGAGGAGTTGAAGGTTTGCAAGCAGGAGTATGAAAGCCGTGGGAATAAGATGGACGCTTCATCAGCTGAGAGCA TAGACGGGGAAGAGCATATGGTTGACTCTGTTTTAACAACTCTGACCCGTGAAGATGAAATAAGCTGTGGCCGTGCTTTTCTCGACGCAAACAGGGATCA GGAGCCATGTCGAAAGTTGCTCAAGATATGGAGCAGCTTGAAGCCCTCAACTCGAAAGGTTATGTTACTTGCTGCTAAAGTGAACATCCTTGAAAACGAT AAAGAGCATCTTAGGATCAACCTTACAAGAGCTGAAGAAGAGGTGGAGTTGCTATTCCAAGAGAACAAAATTTTGAATGAGGAGAACCGAAAGCTAGTGA AACAGCTTAAGAGAGAAAGAAACTCTGATGCTTCTGGCGAAAAGCAATGTAGCAGTGGATCTTCGAAGAGGAGCAAACGGAAGTCGTCGAGTCCCAGAAG CAGTGTGAGTTCAGTTGGAGGGAATATCGACTTCGGGCAGGAAATGGAGCAGATGTTGAGGCAGCCGCTGTCACCATTGCGTCAATACTCGGTTGATGTT CGAATGATTTGA
AA sequence Show only first row Show all	>Lus10041137 pacid=23179844 polypeptide=Lus10041137 locus=Lus10041137.g ID=Lus10041137.BGIv1.0 annot-version=v1.0 MPIAVSHRRILRQCIVLDEKLREKDQILDRAKAEATMNAVALKKFVEENQKLAGECANLVAQCKKWERECTLYDNDREALMEFGNEADERAKDAEIRVHE LEETLQRMSEELKVCKQEYESRGNKMDASSAESIDGEEHMVDSVLTTLTREDEISCGRAFLDANRDQEPCRKLLKIWSSLKPSTRKVMLLAAKVNILEND KEHLRINLTRAEEEVELLFQENKILNEENRKLVKQLKRERNSDASGEKQCSSGSSKRSKRKSSSPRSSVSSVGGNIDFGQEMEQMLRQPLSPLRQYSVDV RMI

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G09060			unknown protein		Lus10041137 [exp]	0	1
AT4G01730			DHHC-type zinc finger family p...		Lus10009971 [exp]	4.7	0.9504
AT4G09060			unknown protein		Lus10036467 [exp]	5.2	0.9479
AT5G51600		ATMAP65-3, PLE	PLEIADE, ARABIDOPSIS THALIANA ...		Lus10037691 [exp]	5.4	0.9507
AT1G47230		CYCA3;4	CYCLIN A3;4 (.1.2)		Lus10018715 [exp]	11.7	0.9373
AT5G42330			unknown protein		Lus10030749 [exp]	14.1	0.9357
AT1G67820			Protein phosphatase 2C family ...		Lus10006222 [exp]	15.4	0.9347
AT5G66230			Chalcone-flavanone isomerase f...		Lus10025961 [exp]	17.3	0.9348
AT4G14330			P-loop containing nucleoside t...		Lus10021167 [exp]	17.4	0.9339
AT5G66230			Chalcone-flavanone isomerase f...		Lus10014261 [exp]	19.2	0.9325
AT2G29680		CDC6, ATCDC6	cell division control 6 (.1.2)		Lus10009446 [exp]	21.0	0.9304

Compare expression of checked genes

Lus10041137 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.