Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G09040 168 / 7e-51 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2) AT2G35410 109 / 7e-28 RNA-binding (RRM/RBD/RNP motifs) family protein (.1) AT2G37220 85 / 7e-19 RNA-binding (RRM/RBD/RNP motifs) family protein (.1) AT1G60000 84 / 1e-18 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2) AT4G24770 80 / 5e-17 CP31, ATRBP33, ATRBP31, RBP31 ARABIDOPSIS THALIANA RNA BINDING PROTEIN, APPROXIMATELY 31 KD, 31-kDa RNA binding protein (.1) AT3G52150 76 / 9e-16 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2) AT3G52380 77 / 1e-15 CP33, PDE322 PIGMENT DEFECTIVE 322, chloroplast RNA-binding protein 33 (.1) AT5G50250 75 / 3e-15 CP31B chloroplast RNA-binding protein 31B (.1) AT1G01080 65 / 7e-12 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2) AT3G16380 63 / 7e-11 PAB6 poly(A) binding protein 6 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10036468 [exp] 385 / 7e-136 AT4G09040 164 / 3e-49 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2) Lus10020945 [exp] 195 / 9e-61 AT4G09040 219 / 6e-70 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2) Lus10008721 [exp] 194 / 2e-60 AT4G09040 218 / 8e-70 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2) Lus10035678 [exp] 103 / 2e-25 AT2G35410 231 / 2e-74 RNA-binding (RRM/RBD/RNP motifs) family protein (.1) Lus10037265 [exp] 102 / 3e-25 AT2G35410 234 / 1e-75 RNA-binding (RRM/RBD/RNP motifs) family protein (.1) Lus10029372 [exp] 86 / 9e-19 AT3G52380 269 / 6e-89 PIGMENT DEFECTIVE 322, chloroplast RNA-binding protein 33 (.1) Lus10016174 [exp] 83 / 5e-18 AT3G52380 275 / 3e-91 PIGMENT DEFECTIVE 322, chloroplast RNA-binding protein 33 (.1) Lus10026514 [exp] 82 / 9e-18 AT2G37220 284 / 4e-96 RNA-binding (RRM/RBD/RNP motifs) family protein (.1) Lus10002222 [exp] 77 / 5e-16 AT3G53460 263 / 1e-87 chloroplast RNA-binding protein 29 (.1.2.3.4)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G161000 [exp] 192 / 2e-59 AT4G09040 219 / 5e-70 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2) Potri.001G141300 [exp] 114 / 2e-29 AT2G35410 248 / 2e-81 RNA-binding (RRM/RBD/RNP motifs) family protein (.1) Potri.008G172100 [exp] 94 / 3e-22 AT1G60000 288 / 5e-98 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2) Potri.010G065600 [exp] 91 / 3e-21 AT1G60000 287 / 9e-98 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2) Potri.009G065900 [exp] 90 / 6e-21 AT3G52150 237 / 2e-78 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2) Potri.016G090700 [exp] 85 / 7e-19 AT2G37220 302 / 4e-103 RNA-binding (RRM/RBD/RNP motifs) family protein (.1) Potri.012G090200 [exp] 83 / 4e-18 AT4G24770 310 / 7e-105 ARABIDOPSIS THALIANA RNA BINDING PROTEIN, APPROXIMATELY 31 KD, 31-kDa RNA binding protein (.1) Potri.015G086500 [exp] 77 / 8e-16 AT4G24770 290 / 6e-97 ARABIDOPSIS THALIANA RNA BINDING PROTEIN, APPROXIMATELY 31 KD, 31-kDa RNA binding protein (.1) Potri.006G127200 [exp] 73 / 9e-15 AT2G37220 269 / 5e-90 RNA-binding (RRM/RBD/RNP motifs) family protein (.1) Potri.001G340800 [exp] 71 / 4e-14 AT4G24770 322 / 2e-110 ARABIDOPSIS THALIANA RNA BINDING PROTEIN, APPROXIMATELY 31 KD, 31-kDa RNA binding protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0221 [flax] [poplar] RRM PF00076 [flax] [poplar] RRM_1 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)
Representative CDS sequence Show only first row Show all	>Lus10041138 pacid=23179822 polypeptide=Lus10041138 locus=Lus10041138.g ID=Lus10041138.BGIv1.0 annot-version=v1.0 ATGGCGGCTTCGATGCTCCGAGTTTCCTCTTCACTAGCAGCGCCATCCTTTCCCGATAGACTTCCTTCTTCTTCTTCTTTATCTCTTCAGAGCTCATTTG GGTACTTTACCCTTCCATTTTCTCCTCCATCCCATTTCGTCCCTCTCTGCCTTGTTCGAACCAACGCAGTTACGCCTTTGGCTTCTTCTTCTCCAGTTCA AGCCGTGCTCCAAAACTTTGGCTACGGAGAAGATAAAAAAGAAGAAGTAGTAGAAGAAGAGTTTCTTAAGGACAGGATTTGCGCTTCTAATTTTCCATGG ACATCGACTACAGAGGACATCCGGTCATTGTTCGAGAAATTCGGTACCGTTGTGGACATTGAGGTTCCGATGCACTCAAAGGGCAGGGGTAGAGGTCTAG CGTTTGTTACAATGGCGTCTCCTGAGGAAGCTGCTTCTGCCATGGAGAACCTGGATAATTATGAATACGGTGGGCGACCCTTGAAGATGAACTATGCCAA ACCCAAGAAACAGAAGTACACTTCCTCGACACCGAAGACCTTGACCACCAAGCAAGGTCAACCGGCGTTCTGCTTGTACGTTTCGAATTTGTCGTATGAA GCTAACGAAGAGGACTTGAAGCAGTTTTTCGTTGAAGGAGGGGCTAATATCCTTGCTGCTGAGCTTATATATACTCAGAATCCTAGAAGGTCCACTGGCT TCGGATTCGTCTTCTTCAAAAATAAAAGGGAAGCTGAAGCAGCCATCTCTACTTTCCAAGATAAGGAACTAATGGGAAGACCGATAAGAGTGGCTCGCGG CAGGCAATTCTTCAGGTCACCAAGAATCCAAGGTTCTACAGCAACTGATGATACAACAGCAACAACAACTGATGATACAGCATCAGCTAATAAAACAGTT TCATAA
AA sequence Show only first row Show all	>Lus10041138 pacid=23179822 polypeptide=Lus10041138 locus=Lus10041138.g ID=Lus10041138.BGIv1.0 annot-version=v1.0 MAASMLRVSSSLAAPSFPDRLPSSSSLSLQSSFGYFTLPFSPPSHFVPLCLVRTNAVTPLASSSPVQAVLQNFGYGEDKKEEVVEEEFLKDRICASNFPW TSTTEDIRSLFEKFGTVVDIEVPMHSKGRGRGLAFVTMASPEEAASAMENLDNYEYGGRPLKMNYAKPKKQKYTSSTPKTLTTKQGQPAFCLYVSNLSYE ANEEDLKQFFVEGGANILAAELIYTQNPRRSTGFGFVFFKNKREAEAAISTFQDKELMGRPIRVARGRQFFRSPRIQGSTATDDTTATTTDDTASANKTV S

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G09040			RNA-binding (RRM/RBD/RNP motif...		Lus10041138 [exp]	0	1
AT2G31580			tRNAHis guanylyltransferase (....		Lus10006155 [exp]	1.4	0.9611
AT2G42220			Rhodanese/Cell cycle control p...		Lus10021032 [exp]	2.6	0.9668
AT1G23070			Protein of unknown function (D...		Lus10036614 [exp]	3.5	0.9603
AT1G22130	MADS	AGL104	AGAMOUS-like 104 (.1)		Lus10022505 [exp]	5.5	0.9528
AT1G29930		LHCB1.3, CAB140...	LIGHT-HARVESTING CHLOROPHYLL A...		Lus10007362 [exp]	7.5	0.9548
AT1G52230		PSAH2, PSAH-2, ...	PHOTOSYSTEM I SUBUNIT H-2, pho...		Lus10035864 [exp]	11.2	0.9509
AT5G52970			thylakoid lumen 15.0 kDa prote...		Lus10023013 [exp]	11.5	0.9131
AT5G59800		ATMBD7, MBD7	ARABIDOPSIS THALIANA METHYL-CP...		Lus10040859 [exp]	11.9	0.9014
AT3G09860			unknown protein		Lus10023014 [exp]	12.4	0.9090
AT3G48420			Haloacid dehalogenase-like hyd...		Lus10016820 [exp]	15.5	0.9295

Compare expression of checked genes

Lus10041138 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.