Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G78160 436 / 1e-145 APUM7 pumilio 7 (.1) AT1G22240 414 / 7e-139 APUM8 pumilio 8 (.1) AT1G35730 355 / 3e-115 APUM9 pumilio 9 (.1) AT4G08840 350 / 2e-113 APUM11 pumilio 11 (.1) AT5G56510 335 / 4e-107 APUM12 pumilio 12 (.1) AT1G35750 330 / 4e-106 APUM10 pumilio 10 (.1) AT3G20250 189 / 7e-51 APUM5 pumilio 5 (.1) AT2G29190 184 / 5e-49 APUM2 pumilio 2 (.1.2) AT3G10360 182 / 2e-48 APUM4 pumilio 4 (.1) AT2G29140 179 / 2e-47 APUM3 pumilio 3 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10036469 [exp] 944 / 0 AT1G78160 441 / 5e-149 pumilio 7 (.1) Lus10024793 [exp] 273 / 5e-84 AT5G56510 283 / 1e-87 pumilio 12 (.1) Lus10018710 [exp] 270 / 8e-83 AT5G56510 281 / 3e-87 pumilio 12 (.1) Lus10037976 [exp] 192 / 9e-52 AT3G10360 941 / 0.0 pumilio 4 (.1) Lus10000516 [exp] 178 / 3e-50 AT2G29200 638 / 0.0 pumilio 1 (.1) Lus10004976 [exp] 184 / 4e-49 AT2G29200 971 / 0.0 pumilio 1 (.1) Lus10001567 [exp] 184 / 5e-49 AT2G29200 977 / 0.0 pumilio 1 (.1) Lus10033353 [exp] 183 / 7e-49 AT3G20250 732 / 0.0 pumilio 5 (.1) Lus10002708 [exp] 183 / 9e-49 AT2G29200 1009 / 0.0 pumilio 1 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G095400 [exp] 461 / 5e-154 AT1G78160 473 / 8e-158 pumilio 7 (.1) Potri.003G222300 [exp] 359 / 1e-114 AT5G56510 497 / 4e-168 pumilio 12 (.1) Potri.001G002600 [exp] 352 / 5e-112 AT5G56510 525 / 3e-179 pumilio 12 (.1) Potri.002G120900 [exp] 260 / 2e-79 AT5G56510 278 / 2e-86 pumilio 12 (.1) Potri.014G020300 [exp] 255 / 1e-77 AT5G56510 260 / 1e-79 pumilio 12 (.1) Potri.001G298000 [exp] 199 / 1e-55 AT5G56510 211 / 2e-60 pumilio 12 (.1) Potri.008G036500 [exp] 201 / 1e-54 AT3G10360 907 / 0.0 pumilio 4 (.1) Potri.010G225600 [exp] 199 / 5e-54 AT3G10360 868 / 0.0 pumilio 4 (.1) Potri.010G201100 [exp] 187 / 5e-50 AT2G29200 923 / 0.0 pumilio 1 (.1) Potri.003G009900 [exp] 183 / 9e-49 AT4G25880 725 / 0.0 pumilio 6 (.1.2.3)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0020 [flax] [poplar] TPR PF00806 [flax] [poplar] PUF Pumilio-family RNA binding repeat
Representative CDS sequence Show only first row Show all	>Lus10041139 pacid=23179730 polypeptide=Lus10041139 locus=Lus10041139.g ID=Lus10041139.BGIv1.0 annot-version=v1.0 ATGTTGAAGGTCGCCGGAGGTAGCTTGATCCGACGAGGAGACGAGGTCGACAACGACGGCAGCGGTGGTTTCGGCGTTCATAATCATCACCACCACCGCC GGAAACAACTGCTACAGCACTACAATCACAGTACTGCAACGCCAACCACTACTTTTTCCGGCAACTGCTCTTCCGCCGACGGCGGTTCTCCGCAGCTGCT GCCACCACCGCCTCATCGCGGCGGAGGAGACGCCGCCTTACTTTACAAGTACCAAACTCTTCTCCGCAACGAACCTGACGTCATCAATGGCTTCCACATG GCGTATGATGATGACGATAATAATGAACTGGTGGGCCGCCTGTCTCAAAGGTTTCATGAATTTCAAATCCGGGAACAGATTCGTACTGGATTACTCTCCG ATGGGTTTATTCACGGCGGCGGAGGTGGAGGAGATCGACATCATCAGTACTACAACAACAACTATGAGGCGAATTCATACAGAGATTTCAACAACGGCGC CGTTTACGATTCCAAGTGTACTACTGGGTTTGGTGGTGTGCCCCATCAGAACGGAGTTTATGATTCCATGCGGCCGGTTACATCGGTCGTCGGCCGGAAT CGTCATCATCATGATAATCATCTCAACGGTGGTGGTTGGAGCAATCCGGACCAGTCAAGGATTGAAGCTTACAAAAGGGTGATGTTGACAGAATGGGCAA GAAGAGGCAGTATCCCTAGTACTGAAACTCACAACAATGATGCTTCAGCTCGCCATGCTTTCCAGATTCCATCTGAAGAAAGCGCCAATAACCATAATCC AAGGGAAAAAAGCTCCATCGTCAAGGAAACTCTGAACAACAATGTTAACAACACTACTTGTTCATCCTGCCAGGTGGAAGGCCATGTGTACTCAATGGCC AAAGACCAAAACGGCTGCCGCTTCCTGCAGAGAGTGTTTGACGAAGGCTCCACCAAGGAAATGGGGATGATATTCGATGAAATCGTCGATCATGTCGTGG AGCTTTCCCTGAATCAGTTTGGAAACTATGTGATCCAGAAGATGTTGGATGTTTGTGATGAGGTTCAACGACTGCAAATTGTGTATATGCTCACTAAACA AGCTGGGCAGCTGGTCAAGATCAGCTTGAATACATACGGGACACGTGTTGTGCAAAAGCTGGTTGAGACTCTCAAGACGAGGCAGCAGATTACCTTACTT GTGTTAGCGTTGAAGCCTGGTCTGAGAGATGTGGTTGAGGATCAGAATGGGAATCATGTTGTTCAGAGTTGCTTGAAATACCTCAGCAATGACGATAACA AGTTCATCTTTGATGCTGCTTCAAAGTTCTGTGTTGATATTGGAACACACCAGCATGGATGCTGCGTGATGCAGAAATGCATTGATCACTTCAAGGGGAA GTATCTTGACAAGCTAATCACCGAGATTTCCAAGCATGCCGTTCGACTCTCTCAAGACCCATTCGGAAACTATGTGATTCAGCATGTGATCGAGCAAGAG AAGCCATTAATGACTGCAAAGCTTCTCCCACAGCTGGAAGGCAACTTCGTGCACCTTTCGATGCAGAAATGCAGCAGCAATGTCGTCGAGAGGTGCATCA AGCACTGCGAAGAAAGCAGGGCGCATATAATCCACGAGCTGCTCTCTGTACCTCATTTTGATCAGCTTCTTCAGGATCCCTTCGCCAACTATGTCATCCA AACTGCTCTCATCTTCACCAAGGGTCCACTTCATTCCCTGCTGGTGGATGCGATCCGCCCGCATTCGAGGCTGCGTACGAGTCCGTACTGCAAGAGGATC TTCTCAAGAAACATGCTGAAGAAATGA
AA sequence Show only first row Show all	>Lus10041139 pacid=23179730 polypeptide=Lus10041139 locus=Lus10041139.g ID=Lus10041139.BGIv1.0 annot-version=v1.0 MLKVAGGSLIRRGDEVDNDGSGGFGVHNHHHHRRKQLLQHYNHSTATPTTTFSGNCSSADGGSPQLLPPPPHRGGGDAALLYKYQTLLRNEPDVINGFHM AYDDDDNNELVGRLSQRFHEFQIREQIRTGLLSDGFIHGGGGGGDRHHQYYNNNYEANSYRDFNNGAVYDSKCTTGFGGVPHQNGVYDSMRPVTSVVGRN RHHHDNHLNGGGWSNPDQSRIEAYKRVMLTEWARRGSIPSTETHNNDASARHAFQIPSEESANNHNPREKSSIVKETLNNNVNNTTCSSCQVEGHVYSMA KDQNGCRFLQRVFDEGSTKEMGMIFDEIVDHVVELSLNQFGNYVIQKMLDVCDEVQRLQIVYMLTKQAGQLVKISLNTYGTRVVQKLVETLKTRQQITLL VLALKPGLRDVVEDQNGNHVVQSCLKYLSNDDNKFIFDAASKFCVDIGTHQHGCCVMQKCIDHFKGKYLDKLITEISKHAVRLSQDPFGNYVIQHVIEQE KPLMTAKLLPQLEGNFVHLSMQKCSSNVVERCIKHCEESRAHIIHELLSVPHFDQLLQDPFANYVIQTALIFTKGPLHSLLVDAIRPHSRLRTSPYCKRI FSRNMLKK

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G78160		APUM7	pumilio 7 (.1)		Lus10041139 [exp]	0	1
AT2G31050			Cupredoxin superfamily protein...		Lus10039842 [exp]	2.0	0.8957
					Lus10014738 [exp]	2.2	0.8422
AT5G62360			Plant invertase/pectin methyle...		Lus10024596 [exp]	2.8	0.9005
AT1G03440			Leucine-rich repeat (LRR) fami...		Lus10031601 [exp]	5.3	0.8485
AT5G10530			Concanavalin A-like lectin pro...		Lus10007077 [exp]	5.5	0.8680
AT5G48380		BIR1	BAK1-interacting receptor-like...		Lus10036704 [exp]	11.4	0.8208
AT5G53870		AtENODL1	early nodulin-like protein 1 (...		Lus10018606 [exp]	17.9	0.8322
					Lus10012088 [exp]	18.3	0.7559
AT1G71760			unknown protein		Lus10004010 [exp]	22.7	0.8061
AT5G22820			ARM repeat superfamily protein...		Lus10005366 [exp]	23.2	0.8299

Compare expression of checked genes

Lus10041139 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.