Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G26480 249 / 6e-84 GF14IOTA, GRF12 general regulatory factor 12 (.1) AT1G34760 243 / 2e-81 RHS5, GF14OMICRON, GRF11 ROOT HAIR SPECIFIC 5, general regulatory factor 11 (.1.2) AT2G42590 231 / 7e-77 GENERALREGULATORYFACTOR9, GF14MU, GRF9 general regulatory factor 9 (.1.2.3) AT1G22300 228 / 1e-75 14-3-3EPSILON, GF14EPSILON, GRF10 14-3-3 PROTEIN G-BOX FACTOR14 EPSILON, general regulatory factor 10 (.1.2.3) AT1G78300 214 / 3e-70 14-3-3OMEGA, GF14OMEGA, GRF2 14-3-3 PROTEIN G-BOX FACTOR14 OMEGA, general regulatory factor 2 (.1) AT3G02520 209 / 4e-68 GENERALREGULATORYFACTOR7, GF14NU, GRF7 general regulatory factor 7 (.1) AT5G38480 206 / 5e-67 RCI1, GRF3 general regulatory factor 3 (.1.2) AT1G35160 206 / 8e-67 14-3-3PHI, GF14PHI, GRF4 ,GF14 PHI GENERAL REGULATORY FACTOR 4, 14-3-3 PROTEIN G-BOX FACTOR14 PHI, GF14 protein phi chain (.1.2) AT5G65430 204 / 2e-66 14-3-3KAPPA, GF14KAPPA, GRF8 14-3-3 PROTEIN G-BOX FACTOR14 KAPPA, general regulatory factor 8 (.1.2.3) AT4G09000 204 / 2e-66 GF14CHI, GRF1 GENERAL REGULATORY FACTOR1-G-BOX FACTOR 14-3-3 HOMOLOG ISOFORM CHI, general regulatory factor 1 (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10036471 [exp] 286 / 1e-98 AT1G26480 406 / 7e-145 general regulatory factor 12 (.1) Lus10029835 [exp] 241 / 3e-80 AT2G42590 417 / 1e-148 general regulatory factor 9 (.1.2.3) Lus10020705 [exp] 240 / 4e-80 AT2G42590 399 / 2e-141 general regulatory factor 9 (.1.2.3) Lus10017650 [exp] 235 / 2e-78 AT2G42590 420 / 5e-150 general regulatory factor 9 (.1.2.3) Lus10036896 [exp] 233 / 2e-77 AT1G26480 462 / 5e-167 general regulatory factor 12 (.1) Lus10026660 [exp] 229 / 8e-76 AT1G26480 457 / 7e-165 general regulatory factor 12 (.1) Lus10004652 [exp] 224 / 6e-74 AT1G26480 457 / 4e-165 general regulatory factor 12 (.1) Lus10033609 [exp] 227 / 7e-73 AT2G42590 410 / 9e-144 general regulatory factor 9 (.1.2.3) Lus10001894 [exp] 220 / 1e-72 AT2G42590 405 / 1e-144 general regulatory factor 9 (.1.2.3)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G097500 [exp] 258 / 2e-87 AT1G26480 419 / 4e-150 general regulatory factor 12 (.1) Potri.005G164500 [exp] 251 / 6e-85 AT1G34760 417 / 3e-149 ROOT HAIR SPECIFIC 5, general regulatory factor 11 (.1.2) Potri.001G392200 [exp] 243 / 2e-81 AT2G42590 428 / 2e-153 general regulatory factor 9 (.1.2.3) Potri.011G110900 [exp] 239 / 4e-80 AT2G42590 424 / 4e-152 general regulatory factor 9 (.1.2.3) Potri.008G095000 [exp] 235 / 1e-78 AT1G26480 440 / 3e-158 general regulatory factor 12 (.1) Potri.010G159300 [exp] 229 / 3e-76 AT1G26480 466 / 2e-168 general regulatory factor 12 (.1) Potri.004G101700 [exp] 212 / 2e-69 AT3G02520 472 / 5e-171 general regulatory factor 7 (.1) Potri.017G113300 [exp] 210 / 1e-68 AT3G02520 468 / 2e-169 general regulatory factor 7 (.1) Potri.005G162400 [exp] 209 / 4e-68 AT1G78300 475 / 2e-172 14-3-3 PROTEIN G-BOX FACTOR14 OMEGA, general regulatory factor 2 (.1) Potri.002G099800 [exp] 208 / 9e-68 AT1G78300 473 / 3e-171 14-3-3 PROTEIN G-BOX FACTOR14 OMEGA, general regulatory factor 2 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00244 [flax] [poplar] 14-3-3 14-3-3 protein
Representative CDS sequence Show only first row Show all	>Lus10041141 pacid=23179968 polypeptide=Lus10041141 locus=Lus10041141.g ID=Lus10041141.BGIv1.0 annot-version=v1.0 ATGGACAAGGGAAGAGAGCAGCTGGTGTACTTGGCCAGACTAGATGAGCAAGCTGAGAGATACGATGCTAGGACCGGAACTGACAGTGGAGGAGAGGAAT CTAGCCTCTGTAGGTTACAAGAACGTGATCGGAACGAGGAGGGCATCGTGGCGTATACTGTACAGAAGGAAGAATCCAGGGGGGATGAACACAATGCCGA GAGGATCAAAGAATACAGGCAGAGAGTCGAGAACGAGCTCGCGAGGATCTGTAACGACATACTATCAGTCATCGATCAGCATCTCATTCCCTCCGCGACC TCTGGGGAGTCGACCGTGTTTTACTACAAAATGAAAGGAGACTACTACCGTTATTTGGCTGAGTTCAAAAGTGAAGGTGATCCCAAAGAAGCTGCGGATC AGTCGCTTAAGGCTTATGAGTGCCTCCAAGATGCAGCAGAAATGGCACCTAAGCATCCAATAAGGCTTGGTCTAGCTCTAAACTTGTCAGTCTTCTATTA TGAGATTCTCAACTCTCCTGAAAGGGCTTGCCACCTTGCTAAGAAAGCCTTTGATGAGGCAATAGCAGAACTCGATAGTCTAAAAGAATAG
AA sequence Show only first row Show all	>Lus10041141 pacid=23179968 polypeptide=Lus10041141 locus=Lus10041141.g ID=Lus10041141.BGIv1.0 annot-version=v1.0 MDKGREQLVYLARLDEQAERYDARTGTDSGGEESSLCRLQERDRNEEGIVAYTVQKEESRGDEHNAERIKEYRQRVENELARICNDILSVIDQHLIPSAT SGESTVFYYKMKGDYYRYLAEFKSEGDPKEAADQSLKAYECLQDAAEMAPKHPIRLGLALNLSVFYYEILNSPERACHLAKKAFDEAIAELDSLKE

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G26480		GF14IOTA, GRF12	general regulatory factor 12 (...		Lus10041141 [exp]	0	1
AT1G15660		CENP-C	CENP-C HOMOLOGUE, centromere p...		Lus10023105 [exp]	4.2	0.7939
AT1G06620			2-oxoglutarate (2OG) and Fe(II...		Lus10023499 [exp]	5.7	0.7516
AT3G29590		AT5MAT	HXXXD-type acyl-transferase fa...		Lus10041655 [exp]	21.4	0.7788
AT5G14400		CYP724A1	"cytochrome P450, family 724, ...		Lus10022298 [exp]	23.8	0.6779
AT1G34360			translation initiation factor ...		Lus10032318 [exp]	27.1	0.7530
AT3G52525	OFP	ATOFP6, OFP6	ARABIDOPSIS THALIANA OVATE FAM...		Lus10016978 [exp]	37.0	0.7310
AT3G02110		SCPL25	serine carboxypeptidase-like 2...		Lus10032980 [exp]	50.6	0.7140
AT2G02120		PDF2.1, LCR70	LOW-MOLECULAR-WEIGHT CYSTEINE-...		Lus10019226 [exp]	82.8	0.6773
AT1G23790			Plant protein of unknown funct...		Lus10030619 [exp]	89.6	0.6834
AT3G59140		ATMRP14, ABCC10	ATP-binding cassette C10, mult...		Lus10028740 [exp]	97.2	0.6737

Compare expression of checked genes

Lus10041141 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.