Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G22260 401 / 7e-129 AtZYP1a, ZYP1a Myosin heavy chain-related protein (.1) AT1G22275 398 / 7e-128 ZYP1b Myosin heavy chain-related protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10036517 [exp] 1051 / 0 AT1G22260 663 / 0.0 Myosin heavy chain-related protein (.1) Lus10032798 [exp] 874 / 0 AT1G22260 575 / 0.0 Myosin heavy chain-related protein (.1) Lus10010242 [exp] 569 / 0 AT1G22275 279 / 5e-83 Myosin heavy chain-related protein (.1) Lus10036473 [exp] 252 / 3e-80 AT1G22275 86 / 6e-20 Myosin heavy chain-related protein (.1) Lus10019419 [exp] 124 / 2e-33 AT1G22260 47 / 4e-07 Myosin heavy chain-related protein (.1) Lus10030096 [exp] 68 / 6e-14 AT1G22275 47 / 4e-07 Myosin heavy chain-related protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G096400 [exp] 534 / 2e-180 AT1G22275 786 / 0.0 Myosin heavy chain-related protein (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10041143 pacid=23179787 polypeptide=Lus10041143 locus=Lus10041143.g ID=Lus10041143.BGIv1.0 annot-version=v1.0 ATGGTCACCCTTGCTTTATGCTATCTATTTATTGTTCTGTGGAATTACACGTGGGAGTCCTTTTCTCTGTCTGCAGATTCCACGATCAAGCAGTTTGAAG CAAGCCTAGCAGAAAATCAATCAGGCATAAGGATTCTAAACTCGAAACTGGAAAATTTGCATCTGGAATTGAAGCTAAAGGACGATACAATCAAGAATTC CTCGATTGCTGTCCAGAACTTGGAGAAAGAAAAGAGTGACCTGAAACTGAACAAGGAGAGAATTTCTAACGACTTAGATGCCTCACGTGATGAGATAAGG AAGTTGGAAAGTTTTGTTAATGTCTTGACTGTACAGTTAGTTCAACTTGACAAACAAAGTCTGGATTTCACCAAAAACTTTGATCTCCTAAATTCTCTCT ATGATACTTCCTCTAAGTTGATCAAGGAAGAGAAAGACCTTGCTTCCAAGCATGCTAACAAGCAGTACGATATGGTCCACAACCAAGTCGTGGAAATGAC ATCTGAAAGAGAGGATATGCAACTGACGATCAAGGAACTGAATGATGAGATATATGAGCTTGAGAAGGGACAAGACTCTATAAGAGAAATGCTCGCCGAG GAACAGAAATTAGCTGCTCAGAAAATTAGCAAGGTGGAAGCTGAGGCAAAAGCTGTAGAAAAAAAGAAGGATGAAACGGAGTTTACACTTTCAAACTTGG AGGATAAATTCGCTGCTTTGTCAGAAAGCTTAAGTTCATCTGAGAAAGAAATGGATCAACTTCTGCAGAAACTAGCAAGGCTGGAAGAGGAGAACAGAGA CAGCATAGGAAAGTTGCAGGCGGATATACAGGAAAAGGTAGATGAAATCGACAATCTTCAGAAGGAATTTGCAAAACATGACCAAGAAGTACATTCATGG GGGAAGAAAGTCGACGAACTTCAAAATATGGTGCAAGAAAAGGAAGAATTTATTCTGCAAGGCAAGGAGAGCGAAAGAAAGTTGGAAGATCAAATCAATG AGGTTAAGGAATCATTGACCATAGCTGAAAGCAGACTCGTGGAAGTAAGGAAGCAATGTGAGGTGATGCTTGACAGCAAAGAACGGGAGTTGTCCAAGCA TTTGCGAGAAATTTCTACTGGGAATGATCAGGCGATAGCTGCAATTCGGACGAAGTATGAGGATGAGAAGGCAGAAATCATTAACATGGAAAAGGAAAAG GTGAACAAACTACTAAATGACATGGAAAGGAACTGTGATCAGAAACTTTTGGAGCAAAAGGAAGACTCGAGGCAGCAATTACTGCGCATTCAAGACGAGC ATGCTGCACTGATTACAAAAAGCCAGCAGGAAAATGAAACAAAGGAAACGAGTCTTAAAGCTCATCACAGCGAAGAGCTAAAGCATGCAGAACATCAAGC TGTGAAAGGACAAAGAGAGAAGATACTGCAACTACGAAATGAACACGAGGTTCAAATGAAAGCTTTGAAAACCCAGTACGAAGATGTGTGCAAGAAACTA CAGGACGAATTGGATATCCAGAAGTCCAAGGAAGATAGGCAGAGGGCTTTGCTGCAGATGCAGTGGAAAGTGATGAGTGACAAACAAGATAATAATGACG CAGAAGTGAACTCTAAACAGGTCCCGTCGAATTCATCTGTCCAGATGTTAGAACCTAGAACTCGTAAAAGTCCAAGATCACTGTCAAGACCAGACAATGC TAAGACAGGATCTGTAATGCCGACCCCCGTGCATTCCAGAAAGGTTACCCGTCCTGAATACGAGGCTGAACGTGGCGATGGTAAGTCGATCTCGAAACGG AGAAAGACAAGAAATACGGCCGTGCATGAGGATCCTAGGAAACATAAGAGCACCATCCCAAAGGCTGGCACTCCACAAGCTGCAATCAGGAGAGCCATGG GAGCTACCCAACAGGGTCCATCCAACATTGGAGATCTCTTCTCAGAAGGCTCACTCAATCCATATGAAGATGATCCTTATGCTTTCAAGTAG
AA sequence Show only first row Show all	>Lus10041143 pacid=23179787 polypeptide=Lus10041143 locus=Lus10041143.g ID=Lus10041143.BGIv1.0 annot-version=v1.0 MVTLALCYLFIVLWNYTWESFSLSADSTIKQFEASLAENQSGIRILNSKLENLHLELKLKDDTIKNSSIAVQNLEKEKSDLKLNKERISNDLDASRDEIR KLESFVNVLTVQLVQLDKQSLDFTKNFDLLNSLYDTSSKLIKEEKDLASKHANKQYDMVHNQVVEMTSEREDMQLTIKELNDEIYELEKGQDSIREMLAE EQKLAAQKISKVEAEAKAVEKKKDETEFTLSNLEDKFAALSESLSSSEKEMDQLLQKLARLEEENRDSIGKLQADIQEKVDEIDNLQKEFAKHDQEVHSW GKKVDELQNMVQEKEEFILQGKESERKLEDQINEVKESLTIAESRLVEVRKQCEVMLDSKERELSKHLREISTGNDQAIAAIRTKYEDEKAEIINMEKEK VNKLLNDMERNCDQKLLEQKEDSRQQLLRIQDEHAALITKSQQENETKETSLKAHHSEELKHAEHQAVKGQREKILQLRNEHEVQMKALKTQYEDVCKKL QDELDIQKSKEDRQRALLQMQWKVMSDKQDNNDAEVNSKQVPSNSSVQMLEPRTRKSPRSLSRPDNAKTGSVMPTPVHSRKVTRPEYEAERGDGKSISKR RKTRNTAVHEDPRKHKSTIPKAGTPQAAIRRAMGATQQGPSNIGDLFSEGSLNPYEDDPYAFK

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G22260		AtZYP1a, ZYP1a	Myosin heavy chain-related pro...		Lus10041143 [exp]	0	1
AT1G22260		AtZYP1a, ZYP1a	Myosin heavy chain-related pro...		Lus10036517 [exp]	1.0	0.9149
AT2G40980			Protein kinase superfamily pro...		Lus10037692 [exp]	4.5	0.8796
AT1G80670		RAE1	RNA export factor 1, Transduci...		Lus10026095 [exp]	8.0	0.8570
AT2G21050		LAX2	like AUXIN RESISTANT 2 (.1)		Lus10034488 [exp]	11.8	0.8481
AT5G48450		SKS3	SKU5 similar 3 (.1)		Lus10025860 [exp]	12.4	0.8906
AT5G26850			Uncharacterized protein (.1.2....		Lus10020697 [exp]	13.4	0.9026
AT1G28390			Protein kinase superfamily pro...		Lus10018542 [exp]	16.4	0.8570
AT2G45340			Leucine-rich repeat protein ki...		Lus10004032 [exp]	19.3	0.8832
AT1G11820			O-Glycosyl hydrolases family 1...		Lus10031456 [exp]	21.3	0.8434
AT5G06680		ATSPC98, SPC98,...	ARABIDOPSIS THALIANA GAMMA TUB...		Lus10016246 [exp]	24.7	0.8450

Compare expression of checked genes

Lus10041143 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.