Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G43330 585 / 0 c-NAD-MDH2 cytosolic-NAD-dependent malate dehydrogenase 2, Lactate/malate dehydrogenase family protein (.1) AT1G04410 579 / 0 c-NAD-MDH1 cytosolic-NAD-dependent malate dehydrogenase 1, Lactate/malate dehydrogenase family protein (.1) AT5G56720 498 / 9e-175 c-NAD-MDH3 cytosolic-NAD-dependent malate dehydrogenase 3, Lactate/malate dehydrogenase family protein (.1) AT5G58330 244 / 2e-74 lactate/malate dehydrogenase family protein (.1.2.3) AT3G47520 57 / 2e-08 pNAD-MDH, MDH plastidic NAD-dependent malate dehydrogenase, malate dehydrogenase (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10021870 [exp] 632 / 0 AT5G43330 606 / 0.0 cytosolic-NAD-dependent malate dehydrogenase 2, Lactate/malate dehydrogenase family protein (.1) Lus10011819 [exp] 610 / 0 AT5G43330 613 / 0.0 cytosolic-NAD-dependent malate dehydrogenase 2, Lactate/malate dehydrogenase family protein (.1) Lus10021184 [exp] 335 / 8e-113 AT5G43330 322 / 1e-111 cytosolic-NAD-dependent malate dehydrogenase 2, Lactate/malate dehydrogenase family protein (.1) Lus10021869 [exp] 289 / 4e-94 AT4G14380 40 / 8e-04 unknown protein Lus10038668 [exp] 232 / 2e-70 AT5G58330 707 / 0.0 lactate/malate dehydrogenase family protein (.1.2.3) Lus10037935 [exp] 233 / 6e-69 AT5G58330 709 / 0.0 lactate/malate dehydrogenase family protein (.1.2.3) Lus10021183 [exp] 113 / 4e-30 AT1G04410 123 / 6e-36 cytosolic-NAD-dependent malate dehydrogenase 1, Lactate/malate dehydrogenase family protein (.1) Lus10021182 [exp] 112 / 2e-27 AT4G14380 52 / 6e-08 unknown protein Lus10011818 [exp] 111 / 5e-27 AT4G14380 59 / 3e-10 unknown protein
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G071000 [exp] 598 / 0 AT5G43330 602 / 0.0 cytosolic-NAD-dependent malate dehydrogenase 2, Lactate/malate dehydrogenase family protein (.1) Potri.008G166800 [exp] 596 / 0 AT5G43330 605 / 0.0 cytosolic-NAD-dependent malate dehydrogenase 2, Lactate/malate dehydrogenase family protein (.1) Potri.002G141700 [exp] 559 / 0 AT1G04410 572 / 0.0 cytosolic-NAD-dependent malate dehydrogenase 1, Lactate/malate dehydrogenase family protein (.1) Potri.002G141900 [exp] 491 / 2e-172 AT1G04410 501 / 5e-180 cytosolic-NAD-dependent malate dehydrogenase 1, Lactate/malate dehydrogenase family protein (.1) Potri.008G031700 [exp] 220 / 2e-65 AT5G58330 710 / 0.0 lactate/malate dehydrogenase family protein (.1.2.3) Potri.008G167200 [exp] 64 / 2e-11 AT4G14380 87 / 2e-21 unknown protein Potri.004G054200 [exp] 65 / 5e-11 AT1G53240 520 / 0.0 mitochondrial malate dehydrogenase 1, Lactate/malate dehydrogenase family protein (.1) Potri.017G152000 [exp] 64 / 6e-11 AT1G53240 277 / 8e-93 mitochondrial malate dehydrogenase 1, Lactate/malate dehydrogenase family protein (.1) Potri.001G376500 [exp] 59 / 3e-09 AT3G15020 523 / 0.0 mitochondrial malate dehydrogenase 2, Lactate/malate dehydrogenase family protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0341 [flax] [poplar] LDH_C PF02866 [flax] [poplar] Ldh_1_C lactate/malate dehydrogenase, alpha/beta C-terminal domain CL0063 [flax] [poplar] NADP_Rossmann PF00056 [flax] [poplar] Ldh_1_N lactate/malate dehydrogenase, NAD binding domain
Representative CDS sequence Show only first row Show all	>Lus10041144 pacid=23179568 polypeptide=Lus10041144 locus=Lus10041144.g ID=Lus10041144.BGIv1.0 annot-version=v1.0 ATGTCTCGATCTTCATCCTCCACCTGCTCCAGGAAGCTCCACCCGCTGAAACAGTTGCTCACAAAGCTCCAATCCAAGCTCAGCCAACTGGACCGCGTCA TCCGAAACCGAACCAACCGGATCATCACCCATGTCTTCCCACACAACAACAATAGCAACCGGCACAGATCACTCGTGCTGAAACCGCCGTCCTATCAGCT CCACAGCCATTACAACTACATCTCCGATTACTACAGTACCAACCGCAACAATAGCAACCGCGAAATACTCCTCCACAAGAAGAGGAATAAGAATGTCTCC GCCGTCTACATCGACCACCTCTACTCTGAGGAGGCTACTTCGTCCATCTTCGATTTCAATGCCAATTCCAATCTTACAGCCTTGACTGCTGCTGCTGAGC CGGCTAAAACGGCAGCGGATAAGGCCAAAACGACGACGGAGGCTGCAGGTAAGGAAATGGTGATTAGTACTTATAGCGCTAGTTATACAAGGCCGCCGTT GCCCAGGGTTAATAGAAGTAACAACAGCAATGGTGGCGGAGATGGGGCGACGGTGGATCAAACGGTGGTACAGAGGAGGAGGAAGAAGAAGGAGGCGGCG CCTGTAGTGATTGTGGATGAGAAGAATAGTGGTTATAATTCTGTGGAGACTCTGGAAGATGCGTGGCGGGAAGTGGTTGCGAGATCGCCGCAGCTCCGGC CAGTGGAGGTGAGGACGGAGGAGTTCGTATATCAGTTCCAGAAGATCCAGAGGGCTGATCTCTCCATTGTTGAGATGCTGGCCGCGGGACAAATCGGATA TGCTCTTGTTCCCATGATTGCTAGGGGAGTGATGCTTGGTGCTGATCAGCCAGTCATCCTCCACATGCTCGATATTCCACCTGCAGCAGAAGCACTGAAC GGTGTCAAGATGGAGTTGGTAGATGCTGCGTTTCCTCTTCTTAAAGGGGTTGTTGCTACAACTGATGCCGTTGAGGCCTGCACTGGGGTCAACATCGCCG TCATGGTTGGTGGTTTCCCCAGGAAGGAAGGTATGGAGAGGAAGGATGTGATGTCTAAGAATGTCTCCATTTACAAGTCACAGGCTTCTGCCCTTGAGAA GCATGCCGCTCCAAACTGCAAGGTTCTGGTTGTTGCTAACCCAGCAAACACTAATGCTTTAATCCTCAAGGAATTTGCACCATCTATCCCTGAGAAGAAC ATTACTTGCTTGACTAGACTTGACCATAACAGGGCCCTTGGTCAGATCTCAGAGAGACTCAATGTTCCAGTTTCTGATGTGAAAAATGTTATCATTTGGG GAAATCATTCTTCCACCCAATACCCTGATGTCAACCATGCTACTGTTGGTGATAAGCCTGTCAGAGAGCTTGTCAAGGATGATGAATGGCTCAATGCTGC GTTCATTGCTACTGTCCAACAACGAGGTGCTGCTATCATCAAGGCTAGAAAGCTGTCCAGTGCACTCTCTGCTGCAAGCTCAGCTTGTGACCACATCCGT GACTGGGTTCTCGGAACTCCTCAGGGCACATGGGTTTCCATGGGTGTGTACTCTGATGGTTCATACAACGTCCCTGCTGGCCTTATCTATTCCTTCCCTG TTACTTGCGAGAATGGAGAGTGGAAGATTGTCCAGGGACTTTCAATTGACGAGTTCTCGAGGAAGAAGCTGGATCTGACTGCTGAGGAGCTGAGTGAGGA GAAGGCTCTTGCTTACTCGTGCCTCAACTAA
AA sequence Show only first row Show all	>Lus10041144 pacid=23179568 polypeptide=Lus10041144 locus=Lus10041144.g ID=Lus10041144.BGIv1.0 annot-version=v1.0 MSRSSSSTCSRKLHPLKQLLTKLQSKLSQLDRVIRNRTNRIITHVFPHNNNSNRHRSLVLKPPSYQLHSHYNYISDYYSTNRNNSNREILLHKKRNKNVS AVYIDHLYSEEATSSIFDFNANSNLTALTAAAEPAKTAADKAKTTTEAAGKEMVISTYSASYTRPPLPRVNRSNNSNGGGDGATVDQTVVQRRRKKKEAA PVVIVDEKNSGYNSVETLEDAWREVVARSPQLRPVEVRTEEFVYQFQKIQRADLSIVEMLAAGQIGYALVPMIARGVMLGADQPVILHMLDIPPAAEALN GVKMELVDAAFPLLKGVVATTDAVEACTGVNIAVMVGGFPRKEGMERKDVMSKNVSIYKSQASALEKHAAPNCKVLVVANPANTNALILKEFAPSIPEKN ITCLTRLDHNRALGQISERLNVPVSDVKNVIIWGNHSSTQYPDVNHATVGDKPVRELVKDDEWLNAAFIATVQQRGAAIIKARKLSSALSAASSACDHIR DWVLGTPQGTWVSMGVYSDGSYNVPAGLIYSFPVTCENGEWKIVQGLSIDEFSRKKLDLTAEELSEEKALAYSCLN

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G43330		c-NAD-MDH2	cytosolic-NAD-dependent malate...		Lus10041144 [exp]	0	1
AT3G01930			Major facilitator superfamily ...		Lus10035203 [exp]	2.4	0.8666
AT5G43330		c-NAD-MDH2	cytosolic-NAD-dependent malate...		Lus10021870 [exp]	5.4	0.8985
AT3G55440		CYTOTPI, ATCTIM...	CYTOSOLIC ISOFORM TRIOSE PHOSP...		Lus10004963 [exp]	5.7	0.8572
AT2G36530		ENO2, LOS2	LOW EXPRESSION OF OSMOTICALLY ...		Lus10002844 [exp]	11.1	0.8801
AT1G79870			D-isomer specific 2-hydroxyaci...		Lus10035866 [exp]	12.8	0.8699
AT3G11330		PIRL9	plant intracellular ras group-...		Lus10017948 [exp]	15.1	0.8572
AT3G07425			unknown protein		Lus10038229 [exp]	17.3	0.8174
AT4G13940		MEE58, EMB1395,...	MATERNAL EFFECT EMBRYO ARREST ...		Lus10016645 [exp]	17.7	0.8624
AT2G20760			Clathrin light chain protein (...		Lus10018480 [exp]	18.2	0.8683
AT5G19860			Protein of unknown function, D...		Lus10013752 [exp]	18.3	0.8277

Compare expression of checked genes

Lus10041144 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.