Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G40410 126 / 3e-35 Staphylococcal nuclease homologue (.1.2) AT3G56170 113 / 3e-30 CAN Ca-2+ dependent nuclease, Ca-2+ dependent nuclease (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10040967 [exp] 181 / 5e-56 AT2G40410 484 / 2e-173 Staphylococcal nuclease homologue (.1.2) Lus10021812 [exp] 94 / 3e-22 AT1G14750 248 / 1e-74 SOLO DANCERS, Cyclin family protein (.1.2) Lus10034581 [exp] 94 / 5e-22 AT1G14750 260 / 3e-79 SOLO DANCERS, Cyclin family protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G074800 [exp] 148 / 2e-43 AT2G40410 478 / 4e-171 Staphylococcal nuclease homologue (.1.2) Potri.010G182500 [exp] 143 / 2e-41 AT2G40410 477 / 1e-170 Staphylococcal nuclease homologue (.1.2) Potri.010G103800 [exp] 47 / 3e-06 AT1G14750 347 / 2e-112 SOLO DANCERS, Cyclin family protein (.1.2)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10041146 pacid=23179615 polypeptide=Lus10041146 locus=Lus10041146.g ID=Lus10041146.BGIv1.0 annot-version=v1.0 ATGCTAGATAGCCTTTATCCTCTGCTTGACATAATACTTCCGTGCTTTGTGTTTCAGTATGCAAGATTCGAAGATGGAGACGATGAACAAAGTTACCAGA TGTTAAGAGGAAGAGAGAGAAGACACATAGTTCTACAAGACTACTACTACTCGACGAAGGAGTACAGGGACCTAATATCCCAGCAATGTCGGCGGATGAT CCATTGGATTATTGAGGGTTTGTTAGATTTATATTTCCTTTCACTTCCTTCTCACACTCCGGCTCAGGTTGACAATGGTGTCCCGGCGTCATTGTCTAAA GGGGTGAAGTATGAGATGCAGATATTATCAGCGGATGCAAGAGCAATACCTGATGATGATGGCATGATTGTCCATGTAAACACTGCCAATCCTAGGGAGT CATCTTGTCTTCCAGGAGATGTTCAAATTGCGGTTGTTCAGAGAGAGAAAGCTCTGGTAAAACGGAACTGCCGAGAGGCTAATTCACTCCATCAGAAGAT TATCGATGCTGGATATATGGTATTGTATATACAAATCCAGGAGGTTCTTGCAAGGAAGTACAGAATTTGGCTGAGGGGAGTAGATGCACCAGATCCCAAT GTCTTATGGGAAAGAGGTTAA
AA sequence Show only first row Show all	>Lus10041146 pacid=23179615 polypeptide=Lus10041146 locus=Lus10041146.g ID=Lus10041146.BGIv1.0 annot-version=v1.0 MLDSLYPLLDIILPCFVFQYARFEDGDDEQSYQMLRGRERRHIVLQDYYYSTKEYRDLISQQCRRMIHWIIEGLLDLYFLSLPSHTPAQVDNGVPASLSK GVKYEMQILSADARAIPDDDGMIVHVNTANPRESSCLPGDVQIAVVQREKALVKRNCREANSLHQKIIDAGYMVLYIQIQEVLARKYRIWLRGVDAPDPN VLWERG

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G40410			Staphylococcal nuclease homolo...		Lus10041146 [exp]	0	1
					Lus10039764 [exp]	1.4	0.8652
AT1G75790		SKS18	SKU5 similar 18 (.1)		Lus10038672 [exp]	2.4	0.8391
AT5G17430	AP2_ERF	BBM	BABY BOOM, Integrase-type DNA-...		Lus10011303 [exp]	4.5	0.8084
AT5G62420			NAD(P)-linked oxidoreductase s...		Lus10027216 [exp]	4.7	0.7927
					Lus10013650 [exp]	6.2	0.8343
AT3G23130	C2H2ZnF	FLO10, FON1, SU...	SUPERMAN, FLORAL ORGAN NUMBER ...		Lus10022206 [exp]	8.3	0.7867
					Lus10000351 [exp]	9.8	0.8105
					Lus10002886 [exp]	11.0	0.8105
AT5G55050			GDSL-like Lipase/Acylhydrolase...		Lus10021543 [exp]	12.0	0.8105
AT3G26880			Plant self-incompatibility pro...		Lus10022631 [exp]	13.0	0.8105

Compare expression of checked genes

Lus10041146 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.