Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G43400 621 / 0 Uncharacterised conserved protein UCP015417, vWA (.1) AT5G43390 597 / 0 Uncharacterised conserved protein UCP015417, vWA (.1) AT5G13210 524 / 5e-178 Uncharacterised conserved protein UCP015417, vWA (.1) AT3G24780 492 / 7e-165 Uncharacterised conserved protein UCP015417, vWA (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10021875 [exp] 1242 / 0 AT5G43390 803 / 0.0 Uncharacterised conserved protein UCP015417, vWA (.1) Lus10016990 [exp] 391 / 1e-132 AT5G43400 318 / 7e-106 Uncharacterised conserved protein UCP015417, vWA (.1) Lus10013399 [exp] 317 / 2e-103 AT5G43400 261 / 2e-83 Uncharacterised conserved protein UCP015417, vWA (.1) Lus10016989 [exp] 127 / 2e-30 AT4G26510 761 / 0.0 uridine kinase-like 4 (.1.2) Lus10021874 [exp] 60 / 2e-11 ND 56 / 4e-11
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G165200 [exp] 561 / 0 AT5G13210 851 / 0.0 Uncharacterised conserved protein UCP015417, vWA (.1) Potri.009G091400 [exp] 280 / 5e-85 AT5G43400 339 / 3e-108 Uncharacterised conserved protein UCP015417, vWA (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF11443 [flax] [poplar] DUF2828 Domain of unknown function (DUF2828)
Representative CDS sequence Show only first row Show all	>Lus10041147 pacid=23179685 polypeptide=Lus10041147 locus=Lus10041147.g ID=Lus10041147.BGIv1.0 annot-version=v1.0 ATGGCTTCATCCACGAAGATTCTCGGGCCTCCTTCAGTTGCCGGAACTGTCGTAGATCAGCCGGAAAGCACTGTTCCTGTAGCAATTCCATCAACTGAAA CTTCAGTCGACGCCCTTGTCGCCAAGAGCTTGGCGCTAGGACTGGACGAGAATCCGCCTCGCCGCGGCCTGACGGAGCAAGGTTCCGCTACTCACCTCTC CACCGGTAATCCCTGTCTCGATTTCTTCTTCCATATCGTCCCAAACACTCCCGCCGATGAGATGATCCAGCGACTCCAATTGGCTTGGGCTCATGATTCC ACTACTGCCCTCAAGCTGGTCTGCAATCTGCGAGGGGTGAGAGGTACCGGAAAGTCTGACAAAGAAGGTTTCTACGCTGCTGCGCTCTGGCTCTATGATC ACCACCCCAAAACCCTTGCTCTCAACTGTAAGGCCTTCGCTGAGTTCGGCTATTTCAAAGATTTTGTTGAGATTCTCTATCGGATTCTCGAAGGTCTCGG TGTGAGGGAGAAAGCCAAACAGGAAAGGCAACGGGCACGCCTAGGGAAGAGGAGGACGAGGAGATTCCGACATTATTACGATCCCGAGTCGGTCGAAGCC CCCGAGTTAGAGGAGGAACAGCCAGCAAACGAAGCCGGCGAGTTAGAGGACAAACAGCCCGCAAAGGAAGAATCATCGGACCTGGGAGTGGAAGAAGCCA ACGATTCAGACGAAGAGCCAGAATTTAAAGTGAGGATTAGAAAGAGGCACAAGAAGGCGAAGAAAGCCAAGAAAGCCAAGAATTCTGATGACTCTGCGGT GGTGATTGACAAAGAAACCGCGAGGGCACTGCGCAAAGAGCGAGAGATTGCCAAAGCCACTAAGGCTTTGAACAAGTATAATACTGACCCCAATTACAAG CTCTTATTCGACTCTGTTGCTGATCTGTTTGCAGATTTGTTGAAATCCGATACTGAGGCTTTGAAATCGAAGGATTACTCAAAAATCACCTTGGCAGCTA AGTGGTGCCCTTCAATTGATTCTTCATACGACAAGTCATTGCTAGTCTGTGAGGCAATTGCTCGTCGGATGTTTCCCAAGGAGAGCGACAAGCAGTATGA AGCCATGGAAGAGGCACATTACGTTTATCGTGTACGAGACAGGCTTAGGAAAGAGATTTTGGTCCCTCTCCGTAAAGCTCTTCAGCTGCCGGAGGTGTAT ATGAGCGCACGAGAATGGAATACTCTTCCATATGGCAGAGTTCCATCTGTGGCTATGAAGAACTACAAGAACCATTTCATCAAGCACGATAAGGAGAGGT TCGAGCAGTATTTGGAGGATGTGAAGACTGGGAAGGCAAAGATTGCAGCTGGAGCTTTACTTCCTCATGAGATCATCGCCCAGTTGAAAGATAAAGATGG AGGAGCAGTAGCAGAGCTTCAATGGGCGAGGGTGGTAGAAGACATGTCAAAGAAGGGAAAGATGAGCAATTCAATTGCTGTTTGTGATGTGTCTGGGAGC ATGAGCGGAACTCCAATGGAGGTATGTGTGGCGCTTGGGCTTCTGGTATCGGAGCTAAGTGAGGAGCCGTGGAAAGGGAAAGTGATCACATTCAGCGAAA ATCCAGAGATGCATCTAGTGGAGGGAAGCAGTCTGCAGGAGAAGACTGATTTCATTAGGAGGATGGATTGGGGAGGGAGCACTAATTTTTACAAGGTGTT CGATAAGATCCTGGAGACAGCAGTTGCAAACAACCTGACTGAGGATCAACTGATCAAAAGGGTTTTTGTGTTCAGCGACATGGAATTCCACGTAGCATCA ACGGTCTACAACTACGGATACAACTATAACTTTGGAGCTGCATACAACAGCAACAGCGAGGAGGAGGAGGAGGAGGAGGTAGCTGCGGTAGAAGAGGAGC CAAGGGAAAGGAAGTGGGAAACAGATTATGAGGCGATACAGAGGAAGTTTGGGGAGAAAGGGTACAAGAAGGTGCCGGAGGTTGTGTTCTGGAATCTGAG GAATTCGAGGGCTACACCAGTGGCAGGAACTCAGAATGGGGTGGCACTGGTTAGCGGGTTTTCCAAGAATTTGCTGACAATGTTTATTAATGAAGGTGGG ATTGTGAATCCAGAAGATGTCATGGGATTATCTATTGCTGGAGAAGAGTATAAGAAGCTTGCAGTACATGACTGA
AA sequence Show only first row Show all	>Lus10041147 pacid=23179685 polypeptide=Lus10041147 locus=Lus10041147.g ID=Lus10041147.BGIv1.0 annot-version=v1.0 MASSTKILGPPSVAGTVVDQPESTVPVAIPSTETSVDALVAKSLALGLDENPPRRGLTEQGSATHLSTGNPCLDFFFHIVPNTPADEMIQRLQLAWAHDS TTALKLVCNLRGVRGTGKSDKEGFYAAALWLYDHHPKTLALNCKAFAEFGYFKDFVEILYRILEGLGVREKAKQERQRARLGKRRTRRFRHYYDPESVEA PELEEEQPANEAGELEDKQPAKEESSDLGVEEANDSDEEPEFKVRIRKRHKKAKKAKKAKNSDDSAVVIDKETARALRKEREIAKATKALNKYNTDPNYK LLFDSVADLFADLLKSDTEALKSKDYSKITLAAKWCPSIDSSYDKSLLVCEAIARRMFPKESDKQYEAMEEAHYVYRVRDRLRKEILVPLRKALQLPEVY MSAREWNTLPYGRVPSVAMKNYKNHFIKHDKERFEQYLEDVKTGKAKIAAGALLPHEIIAQLKDKDGGAVAELQWARVVEDMSKKGKMSNSIAVCDVSGS MSGTPMEVCVALGLLVSELSEEPWKGKVITFSENPEMHLVEGSSLQEKTDFIRRMDWGGSTNFYKVFDKILETAVANNLTEDQLIKRVFVFSDMEFHVAS TVYNYGYNYNFGAAYNSNSEEEEEEEVAAVEEEPRERKWETDYEAIQRKFGEKGYKKVPEVVFWNLRNSRATPVAGTQNGVALVSGFSKNLLTMFINEGG IVNPEDVMGLSIAGEEYKKLAVHD

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G43400			Uncharacterised conserved prot...		Lus10041147 [exp]	0	1
AT3G17980		AtC2	Arabidopsis thaliana C2 domain...		Lus10009053 [exp]	3.2	0.7516
AT5G03795			Exostosin family protein (.1)		Lus10039142 [exp]	3.5	0.7254
AT1G19025			DNA repair metallo-beta-lactam...		Lus10013876 [exp]	3.9	0.6760
AT1G31770		ABCG14	ATP-binding cassette G14, ATP-...		Lus10035692 [exp]	3.9	0.7280
AT2G31800			Integrin-linked protein kinase...		Lus10008350 [exp]	5.9	0.7045
AT1G77810			Galactosyltransferase family p...		Lus10024750 [exp]	6.0	0.7137
AT3G05010			Protein of unknown function, t...		Lus10040523 [exp]	13.6	0.6642
AT5G04930		ALA1	aminophospholipid ATPase 1 (.1...		Lus10034872 [exp]	14.1	0.7446
AT1G23550		SRO2	similar to RCD one 2 (.1)		Lus10029152 [exp]	23.3	0.7254
AT5G25280			serine-rich protein-related (....		Lus10008808 [exp]	23.5	0.6596

Compare expression of checked genes

Lus10041147 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.