Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G14410 172 / 3e-53 bHLH bHLH104 basic Helix-Loop-Helix 104, basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.2) AT3G23210 160 / 5e-48 bHLH bHLH34, bHLH034 basic Helix-Loop-Helix 34, basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) AT1G51070 143 / 1e-42 bHLH bHLH115 basic Helix-Loop-Helix 115, basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.2) AT5G54680 142 / 4e-42 bHLH bHLH105, ILR3 iaa-leucine resistant3, basic Helix-Loop-Helix 105, basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) AT3G19860 62 / 3e-11 bHLH bHLH121 basic Helix-Loop-Helix 121, basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.2) AT4G36060 57 / 1e-09 bHLH bHLH11, bHLH011 basic Helix-Loop-Helix 11, basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10021876 [exp] 277 / 1e-95 AT4G14410 214 / 4e-70 basic Helix-Loop-Helix 104, basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.2) Lus10021199 [exp] 274 / 5e-94 AT4G14410 221 / 2e-72 basic Helix-Loop-Helix 104, basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.2) Lus10022186 [exp] 272 / 2e-93 AT4G14410 218 / 4e-71 basic Helix-Loop-Helix 104, basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.2) Lus10011167 [exp] 145 / 4e-43 AT5G54680 331 / 4e-116 iaa-leucine resistant3, basic Helix-Loop-Helix 105, basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Lus10043076 [exp] 143 / 2e-42 AT5G54680 330 / 8e-116 iaa-leucine resistant3, basic Helix-Loop-Helix 105, basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Lus10020069 [exp] 142 / 3e-42 AT5G54680 231 / 5e-77 iaa-leucine resistant3, basic Helix-Loop-Helix 105, basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Lus10028456 [exp] 60 / 1e-10 AT3G19860 225 / 2e-72 basic Helix-Loop-Helix 121, basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.2) Lus10041908 [exp] 60 / 1e-10 AT3G19860 224 / 2e-72 basic Helix-Loop-Helix 121, basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.2) Lus10008622 [exp] 40 / 0.0003 AT3G47640 100 / 6e-27 POPEYE, basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.2), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.3)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G072900 [exp] 222 / 1e-73 AT4G14410 230 / 7e-76 basic Helix-Loop-Helix 104, basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.2) Potri.008G165700 [exp] 214 / 2e-70 AT4G14410 181 / 1e-56 basic Helix-Loop-Helix 104, basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.2) Potri.011G031000 [exp] 150 / 4e-45 AT5G54680 264 / 2e-89 iaa-leucine resistant3, basic Helix-Loop-Helix 105, basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Potri.004G031800 [exp] 142 / 3e-42 AT5G54680 226 / 8e-75 iaa-leucine resistant3, basic Helix-Loop-Helix 105, basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Potri.011G132400 [exp] 139 / 1e-40 AT5G54680 222 / 7e-73 iaa-leucine resistant3, basic Helix-Loop-Helix 105, basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Potri.001G416600 [exp] 134 / 9e-39 AT5G54680 223 / 4e-73 iaa-leucine resistant3, basic Helix-Loop-Helix 105, basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Potri.005G113400 [exp] 65 / 3e-12 AT3G19860 211 / 1e-66 basic Helix-Loop-Helix 121, basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.2) Potri.009G129600 [exp] 60 / 2e-10 AT3G19860 238 / 2e-76 basic Helix-Loop-Helix 121, basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.2) Potri.004G168100 [exp] 57 / 1e-09 AT3G19860 250 / 4e-82 basic Helix-Loop-Helix 121, basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.2) Potri.015G142700 [exp] 41 / 0.0002 AT3G47640 170 / 1e-52 POPEYE, basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.2), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.3)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00010 [flax] [poplar] HLH Helix-loop-helix DNA-binding domain
Representative CDS sequence Show only first row Show all	>Lus10041148 pacid=23179769 polypeptide=Lus10041148 locus=Lus10041148.g ID=Lus10041148.BGIv1.0 annot-version=v1.0 ATGGATCCAATTGACGACACCAGTTGCTGGGATTTTCTCGAAACTTTCATCGAAGAACCTGCGTCTTCTTCTTTTCTGTGGCCTAATAACAACAACAACA GCGGTAGCGTGGAAATTGATTTCTCAAGCAGTGGTGCTGTCTCACAGTCACAATTGAAGGACTCTACACGCAAGAGGACACGCAGTGATTCAAGTAGCAA GCCGGGAGCCAAAGCATGTCGTGAGAGGCTTCGTCGAGAGAGATTGAATGATAGGTTTCAAGATCTGAGCGCTGTGTTGGAACCTGGGAGACCTGTGAAA GTTGACAAACCAGCCATACTCGATGATGCCATTAGAGCTTTGAACCAGCTGAAATCCGAGGCACATGAGCTCAAAGAAACGAATGAAAAACTACAAGAAG AAATAAAAAGCTTGAAGGCCGAAAAGAATGAACTCCGTGAGGAGAAACATACACTGAAGGCTGACAAGGAAAGGATGGAGCAACAGGTGAAAGCTATGGG TGTTCCTCCTCCTTCAGGGTATCCGTCTTCTTACCATGCTGGGGGTACCAAGATGCCAATGTACCCGGGCTATAGTCTGATACCAATGTGGCAGTATTTA CCTCCGGCTGCCTGCGACACATCTCGTGACCACGAGTTAAGGCCTCCTGCTGCCTAG
AA sequence Show only first row Show all	>Lus10041148 pacid=23179769 polypeptide=Lus10041148 locus=Lus10041148.g ID=Lus10041148.BGIv1.0 annot-version=v1.0 MDPIDDTSCWDFLETFIEEPASSSFLWPNNNNNSGSVEIDFSSSGAVSQSQLKDSTRKRTRSDSSSKPGAKACRERLRRERLNDRFQDLSAVLEPGRPVK VDKPAILDDAIRALNQLKSEAHELKETNEKLQEEIKSLKAEKNELREEKHTLKADKERMEQQVKAMGVPPPSGYPSSYHAGGTKMPMYPGYSLIPMWQYL PPAACDTSRDHELRPPAA

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G14410	bHLH	bHLH104	basic Helix-Loop-Helix 104, ba...		Lus10041148 [exp]	0	1
AT3G62240	C2H2ZnF		RING/U-box superfamily protein...		Lus10038048 [exp]	2.4	0.9337
AT4G30600			signal recognition particle re...		Lus10035066 [exp]	6.2	0.9453
AT5G09680		RLF	reduced lateral root formation...		Lus10039342 [exp]	6.9	0.9408
AT4G25770			alpha/beta-Hydrolases superfam...		Lus10006982 [exp]	8.3	0.9431
AT2G17650			AMP-dependent synthetase and l...		Lus10028375 [exp]	8.9	0.9078
AT2G01170		BAT1	bidirectional amino acid trans...		Lus10039616 [exp]	9.2	0.9230
AT3G62150		ABCB21, PGP21	ATP-binding cassette B21, P-gl...		Lus10000052 [exp]	10.3	0.9436
AT4G25770			alpha/beta-Hydrolases superfam...		Lus10001320 [exp]	13.3	0.9243
AT3G62220			Protein kinase superfamily pro...		Lus10009983 [exp]	14.5	0.9182
AT3G05290		AtPNC1, PNC1	peroxisomal adenine nucleotide...		Lus10015188 [exp]	14.7	0.9361

Compare expression of checked genes

Lus10041148 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.