Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G14420 158 / 3e-50 HR-like lesion-inducing protein-related (.1) AT1G04340 131 / 9e-40 HR-like lesion-inducing protein-related (.1) AT5G43460 124 / 1e-36 HR-like lesion-inducing protein-related (.1) AT3G23190 74 / 1e-16 HR-like lesion-inducing protein-related (.1) AT3G23180 54 / 4e-09 HR-like lesion-inducing protein-related (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10021877 [exp] 253 / 1e-87 AT4G14420 189 / 1e-62 HR-like lesion-inducing protein-related (.1) Lus10021205 [exp] 110 / 2e-31 AT1G04340 182 / 1e-59 HR-like lesion-inducing protein-related (.1) Lus10041152 [exp] 82 / 3e-20 AT5G43460 144 / 5e-45 HR-like lesion-inducing protein-related (.1) Lus10022198 [exp] 81 / 3e-18 AT5G43500 685 / 0.0 actin-related protein 9 (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G073400 [exp] 189 / 2e-62 AT4G14420 170 / 8e-55 HR-like lesion-inducing protein-related (.1) Potri.008G165200 [exp] 184 / 2e-60 AT4G14420 182 / 8e-60 HR-like lesion-inducing protein-related (.1) Potri.005G222200 [exp] 168 / 5e-54 AT4G14420 159 / 1e-50 HR-like lesion-inducing protein-related (.1) Potri.008G165100 [exp] 129 / 5e-39 AT1G04340 172 / 6e-56 HR-like lesion-inducing protein-related (.1) Potri.010G073500 [exp] 112 / 3e-32 AT5G43460 149 / 8e-47 HR-like lesion-inducing protein-related (.1) Potri.002G040900 [exp] 71 / 9e-17 AT4G14420 62 / 1e-13 HR-like lesion-inducing protein-related (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0131 [flax] [poplar] DoxD-like PF05514 [flax] [poplar] HR_lesion HR-like lesion-inducing
Representative CDS sequence Show only first row Show all	>Lus10041149 pacid=23179862 polypeptide=Lus10041149 locus=Lus10041149.g ID=Lus10041149.BGIv1.0 annot-version=v1.0 ATGGCTTTCGCTTCCTTTGTCGGCCGAGTCCTCTTCGCTTCCATCTTCATGCTTTCGGCTTGGCAAGAGTTCAATGATTATGGCACTGATGGGGGGCTAG CAGCCAAGTCCTTGGAACCAAAACTACACGTCTTCTCAAAGCACGTATCTACAAATACTGGGTTTGCAATTCCGGAGTTTGAGATCAAAGCAGCTGTTGC AGCTGCTATAGCTATGAAAGGCGTGGGAAGCCTTCTCTTTATCTTTGGCAGCTCTCTTGGAGCTTTTCTTCTGATTCTGCACCAGGCGATTTTCATCCCG ATATTGTACGACTTCTACAACTACGATCCAAGCATGAAAGAGTTCAACCAGCTGTTCATCAAATTCACTCAGAACTTGGCCCTGTTTGGAGCATTGCTGT TCTTCATCGGGATGAGGAACTCGATTCCAAGGAGACAACTGAAGAAGAAGCCTCACAAGAAACAACTCTAG
AA sequence Show only first row Show all	>Lus10041149 pacid=23179862 polypeptide=Lus10041149 locus=Lus10041149.g ID=Lus10041149.BGIv1.0 annot-version=v1.0 MAFASFVGRVLFASIFMLSAWQEFNDYGTDGGLAAKSLEPKLHVFSKHVSTNTGFAIPEFEIKAAVAAAIAMKGVGSLLFIFGSSLGAFLLILHQAIFIP ILYDFYNYDPSMKEFNQLFIKFTQNLALFGALLFFIGMRNSIPRRQLKKKPHKKQL

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G14420			HR-like lesion-inducing protei...		Lus10041149 [exp]	0	1
AT1G51730			Ubiquitin-conjugating enzyme f...		Lus10037613 [exp]	3.3	0.9061
AT5G14290			Mitochondrial ribosomal protei...		Lus10041583 [exp]	5.1	0.8983
AT4G14420			HR-like lesion-inducing protei...		Lus10021877 [exp]	7.5	0.8857
AT5G65880			unknown protein		Lus10039652 [exp]	10.4	0.8683
AT2G17070			Arabidopsis protein of unknown...		Lus10007109 [exp]	11.0	0.8655
AT1G11890		ATSEC22, SEC22	SECRETION 22, Synaptobrevin fa...		Lus10036987 [exp]	11.2	0.8912
AT4G08690			Sec14p-like phosphatidylinosit...		Lus10020911 [exp]	12.0	0.8861
AT2G04220			Plant protein of unknown funct...		Lus10027127 [exp]	14.7	0.8728
AT5G52545			unknown protein		Lus10014958 [exp]	17.0	0.8544
AT1G16670			Protein kinase superfamily pro...		Lus10042851 [exp]	17.8	0.8944

Compare expression of checked genes

Lus10041149 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.