Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G33340 390 / 5e-133 CDR1 CONSTITUTIVE DISEASE RESISTANCE 1, Eukaryotic aspartyl protease family protein (.1) AT1G64830 382 / 6e-130 Eukaryotic aspartyl protease family protein (.1) AT2G35615 323 / 2e-106 Eukaryotic aspartyl protease family protein (.1) AT1G31450 299 / 3e-97 Eukaryotic aspartyl protease family protein (.1) AT2G28010 227 / 4e-70 Eukaryotic aspartyl protease family protein (.1) AT2G28040 219 / 3e-67 Eukaryotic aspartyl protease family protein (.1) AT2G28030 216 / 1e-65 Eukaryotic aspartyl protease family protein (.1) AT2G03200 199 / 7e-59 Eukaryotic aspartyl protease family protein (.1) AT1G01300 189 / 2e-54 Eukaryotic aspartyl protease family protein (.1) AT2G28220 192 / 6e-54 Eukaryotic aspartyl protease family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10040325 [exp] 682 / 0 AT5G33340 451 / 5e-157 CONSTITUTIVE DISEASE RESISTANCE 1, Eukaryotic aspartyl protease family protein (.1) Lus10023445 [exp] 681 / 0 AT5G33340 448 / 9e-156 CONSTITUTIVE DISEASE RESISTANCE 1, Eukaryotic aspartyl protease family protein (.1) Lus10041150 [exp] 654 / 0 AT5G33340 399 / 2e-137 CONSTITUTIVE DISEASE RESISTANCE 1, Eukaryotic aspartyl protease family protein (.1) Lus10024903 [exp] 567 / 0 AT5G33340 449 / 3e-156 CONSTITUTIVE DISEASE RESISTANCE 1, Eukaryotic aspartyl protease family protein (.1) Lus10024910 [exp] 559 / 0 AT5G33340 452 / 2e-157 CONSTITUTIVE DISEASE RESISTANCE 1, Eukaryotic aspartyl protease family protein (.1) Lus10022912 [exp] 555 / 0 AT5G33340 450 / 1e-156 CONSTITUTIVE DISEASE RESISTANCE 1, Eukaryotic aspartyl protease family protein (.1) Lus10002613 [exp] 462 / 7e-161 AT5G33340 406 / 4e-139 CONSTITUTIVE DISEASE RESISTANCE 1, Eukaryotic aspartyl protease family protein (.1) Lus10018825 [exp] 437 / 3e-151 AT5G33340 432 / 1e-149 CONSTITUTIVE DISEASE RESISTANCE 1, Eukaryotic aspartyl protease family protein (.1) Lus10002611 [exp] 406 / 4e-139 AT5G33340 392 / 9e-134 CONSTITUTIVE DISEASE RESISTANCE 1, Eukaryotic aspartyl protease family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G114400 [exp] 399 / 2e-136 AT5G33340 475 / 1e-166 CONSTITUTIVE DISEASE RESISTANCE 1, Eukaryotic aspartyl protease family protein (.1) Potri.003G087900 [exp] 370 / 5e-125 AT5G33340 430 / 8e-149 CONSTITUTIVE DISEASE RESISTANCE 1, Eukaryotic aspartyl protease family protein (.1) Potri.003G105300 [exp] 327 / 2e-108 AT2G35615 414 / 2e-142 Eukaryotic aspartyl protease family protein (.1) Potri.019G002100 [exp] 222 / 1e-67 AT2G03200 529 / 0.0 Eukaryotic aspartyl protease family protein (.1) Potri.001G306200 [exp] 221 / 4e-67 AT2G03200 501 / 1e-176 Eukaryotic aspartyl protease family protein (.1) Potri.002G171700 [exp] 191 / 2e-55 AT1G01300 642 / 0.0 Eukaryotic aspartyl protease family protein (.1) Potri.007G106300 [exp] 184 / 2e-52 AT3G20015 575 / 0.0 Eukaryotic aspartyl protease family protein (.1) Potri.014G099400 [exp] 181 / 1e-51 AT1G01300 633 / 0.0 Eukaryotic aspartyl protease family protein (.1) Potri.005G063000 [exp] 171 / 1e-47 AT3G20015 560 / 0.0 Eukaryotic aspartyl protease family protein (.1) Potri.010G128200 [exp] 158 / 3e-43 AT1G25510 622 / 0.0 Eukaryotic aspartyl protease family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0129 [flax] [poplar] Peptidase_AA PF00026 [flax] [poplar] Asp Eukaryotic aspartyl protease
Representative CDS sequence Show only first row Show all	>Lus10041151 pacid=23179522 polypeptide=Lus10041151 locus=Lus10041151.g ID=Lus10041151.BGIv1.0 annot-version=v1.0 ATGACGACACTGATTCATCAATTCATTTCACTATGTACATTCATGTGTCTCATTTCCACATTGGTCAAGGTTCAGAGCATGGGCTTTAGTATGGATTTAA TCCACCGCGACTCCTCCGATTCTCCCTTGTACAACCCTCATGAAACTCAAGCTCAAAGAATCAATCATGCTGCTAGGCGATCCATGGCTAGAGTCCATCG TTTCAGCAACATCATTCATCATATTATTCAGTTGGATGATCCCAACGCTTTGTTAACCGCTAACAACGGGGAGTACTTGGTTAATATCTCTCTTGGCACA CCACCGTTCCCTATTGTTGCCATTGCTGATACAGGCAGCGACATCATATGGACGCAATGCAAGCCATGCCACAATTGTTACAAACAAGACGCTCCGGTGT TTGACCCCAACTCCTCCTCCACTTACAGAACAATATCGTGTTCTTCAGATGCGTGTAATTCGCTTCAAAGTGAAGGAAGTTCGTGCTCTTCAAATGGACA AGTTTGTCAATATCAAGTGAGTTATGGGGATCAATCCCATACCCAAGGTGATGTAGCATCTGAAACACTCACTCTTGGCTCCACAACAGGCCGTTTCGTG GCACTTCCCAAGACCCTAATTGGTTGCGGCCACGACAATGCCGGTACCTTTGACCCTAAAGGTTCTGGCATTGTTGGACTTGGAGGCGGCTCTGCTTCTC TAGTTTCCCAACTTGGTTCGTCCATTGCCGGAAAATTCTCATACTGCCTAGTCCCATACACTTCTACCAACCCCACTAGTACTATGAACTTTGGCACAGA AGCAATTGTATCAGGTAGCAATGTCGTGTCCACTCCTTTGATTTCTGACCCATCTCAACCCACCTTTTACTTCCTTCAACTTGAAGCTATCAGTATCGGA AGCAAGAAAATCCCATTCCAGGTTCCATCCATCGGAAGTTCTAACGGAAACATTATAATTGACTCTGGAACCACGCTAACCCTCGTGCCTAGTGACTTTT TCTCACAACTATCTAATGCTGTGGAGAGCCAGGTCAAGGGCGGCACCAAGACAAGTGACCCGCAAGGCTTTTTCAGCCTCTGCTACGTCGCAGACTCCAA TATCAAAGTTCCTTCAGTAATAGCACACTTCCAAGGAGCTGACTTGGCCATGACAACAAACAACATTTTCATTCACGTCACCAACAAGATTATGTGTTTG GCTTTCTATGCTAACGATGAGTTAAGCATTTACGGAAACGTCGCTCAACAGAACTTTCTAATCGGTTATGACCTTCAAAAACACATGATCTCCTTCAAGC CTACTGATTGCTCAAAGACTAACTGA
AA sequence Show only first row Show all	>Lus10041151 pacid=23179522 polypeptide=Lus10041151 locus=Lus10041151.g ID=Lus10041151.BGIv1.0 annot-version=v1.0 MTTLIHQFISLCTFMCLISTLVKVQSMGFSMDLIHRDSSDSPLYNPHETQAQRINHAARRSMARVHRFSNIIHHIIQLDDPNALLTANNGEYLVNISLGT PPFPIVAIADTGSDIIWTQCKPCHNCYKQDAPVFDPNSSSTYRTISCSSDACNSLQSEGSSCSSNGQVCQYQVSYGDQSHTQGDVASETLTLGSTTGRFV ALPKTLIGCGHDNAGTFDPKGSGIVGLGGGSASLVSQLGSSIAGKFSYCLVPYTSTNPTSTMNFGTEAIVSGSNVVSTPLISDPSQPTFYFLQLEAISIG SKKIPFQVPSIGSSNGNIIIDSGTTLTLVPSDFFSQLSNAVESQVKGGTKTSDPQGFFSLCYVADSNIKVPSVIAHFQGADLAMTTNNIFIHVTNKIMCL AFYANDELSIYGNVAQQNFLIGYDLQKHMISFKPTDCSKTN

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G33340		CDR1	CONSTITUTIVE DISEASE RESISTANC...		Lus10041151 [exp]	0	1
AT2G32350			Ubiquitin-like superfamily pro...		Lus10039679 [exp]	4.4	0.8661
AT3G57270		BG1	"beta-1,3-glucanase 1", beta-1...		Lus10007208 [exp]	7.5	0.8515
AT3G18010	HD	WOX1	WUSCHEL related homeobox 1 (.1...		Lus10018011 [exp]	9.4	0.8516
AT1G30670	bHLH	bHLH052	basic helix-loop-helix (bHLH) ...		Lus10005451 [exp]	10.2	0.8434
AT2G43820		SGT1, ATSAGT1, ...	UDP-glucose:salicylic acid glu...		Lus10020559 [exp]	11.0	0.8050
AT1G33500			unknown protein		Lus10013776 [exp]	11.7	0.7965
AT1G02205		CER1	ECERIFERUM 1, Fatty acid hydro...		Lus10011472 [exp]	12.8	0.8110
AT4G30030			Eukaryotic aspartyl protease f...		Lus10011612 [exp]	20.8	0.7567
					Lus10026868 [exp]	25.9	0.7282
AT3G49950	GRAS		GRAS family transcription fact...		Lus10039709 [exp]	27.0	0.8030

Compare expression of checked genes

Lus10041151 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.