Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G04340 113 / 9e-33 HR-like lesion-inducing protein-related (.1) AT5G43460 112 / 4e-32 HR-like lesion-inducing protein-related (.1) AT4G14420 91 / 7e-24 HR-like lesion-inducing protein-related (.1) AT3G23190 54 / 2e-09 HR-like lesion-inducing protein-related (.1) AT3G23180 50 / 6e-08 HR-like lesion-inducing protein-related (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10022198 [exp] 190 / 1e-57 AT5G43500 685 / 0.0 actin-related protein 9 (.1.2) Lus10021205 [exp] 166 / 1e-53 AT1G04340 182 / 1e-59 HR-like lesion-inducing protein-related (.1) Lus10041149 [exp] 78 / 1e-18 AT4G14420 187 / 7e-62 HR-like lesion-inducing protein-related (.1) Lus10021877 [exp] 74 / 2e-17 AT4G14420 189 / 1e-62 HR-like lesion-inducing protein-related (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G165100 [exp] 136 / 9e-42 AT1G04340 172 / 6e-56 HR-like lesion-inducing protein-related (.1) Potri.010G073500 [exp] 121 / 6e-36 AT5G43460 149 / 8e-47 HR-like lesion-inducing protein-related (.1) Potri.010G073400 [exp] 91 / 8e-24 AT4G14420 170 / 8e-55 HR-like lesion-inducing protein-related (.1) Potri.008G165200 [exp] 87 / 1e-22 AT4G14420 182 / 8e-60 HR-like lesion-inducing protein-related (.1) Potri.005G222200 [exp] 75 / 1e-17 AT4G14420 159 / 1e-50 HR-like lesion-inducing protein-related (.1) Potri.002G040900 [exp] 63 / 1e-13 AT4G14420 62 / 1e-13 HR-like lesion-inducing protein-related (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0131 [flax] [poplar] DoxD-like PF05514 [flax] [poplar] HR_lesion HR-like lesion-inducing
Representative CDS sequence Show only first row Show all	>Lus10041152 pacid=23179629 polypeptide=Lus10041152 locus=Lus10041152.g ID=Lus10041152.BGIv1.0 annot-version=v1.0 ATGGATTCATGTTTGTACTGGATCTTCTTCCTCTGGTTAAATGAATTTGGGGATGATGGCGGGCCAGCTGCCCAGGAGTTGATGTCAAAGCTTTTCATGG TCAAGAAGCATCTTGCAACTACATTAGCAATAACAATGCCAGATATTAATGCTAAACATGTCGTTGCCCTTAACATTGGTCTCAAGAGTCTTGGAGGCTT TCTCTTTGTGTTTGGCACTCCATTTGGGGCATATCTCCTGCTATTCTACTTGGCCGTGAATGCCCCCATTCTCTACGACTTTTATAACTACCGTAAGGGC GAGATCGAGCACTTGATTCTCTTGAACGAATTCTTGCAAAGCGTTGCACTTTTCGGTGCACTGCTTTTCTTTCTGGGAATGAAGAACTTGATTCCAAGGA GACGGATGATGAAGAAGAAGGCAGCCCCCAAGGCTAAAGTAGGTTAA
AA sequence Show only first row Show all	>Lus10041152 pacid=23179629 polypeptide=Lus10041152 locus=Lus10041152.g ID=Lus10041152.BGIv1.0 annot-version=v1.0 MDSCLYWIFFLWLNEFGDDGGPAAQELMSKLFMVKKHLATTLAITMPDINAKHVVALNIGLKSLGGFLFVFGTPFGAYLLLFYLAVNAPILYDFYNYRKG EIEHLILLNEFLQSVALFGALLFFLGMKNLIPRRRMMKKKAAPKAKVG

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G43460			HR-like lesion-inducing protei...		Lus10041152 [exp]	0	1
AT2G22600			RNA-binding KH domain-containi...		Lus10002662 [exp]	2.2	0.8279
AT1G18720			Protein of unknown function (D...		Lus10021661 [exp]	3.0	0.8381
					Lus10029394 [exp]	3.2	0.8803
AT2G36230		HISN3, APG10	ALBINO AND PALE GREEN 10, Aldo...		Lus10017042 [exp]	5.3	0.8365
AT2G26710		CYP72B1, CYP734...	PHYB ACTIVATION TAGGED SUPPRES...		Lus10017771 [exp]	6.5	0.8040
AT5G66240			Transducin/WD40 repeat-like su...		Lus10017157 [exp]	7.0	0.8203
AT1G16570			UDP-Glycosyltransferase superf...		Lus10031569 [exp]	7.7	0.8033
AT4G15950		RDM2, NRPE4, NR...	RNA-DIRECTED DNA METHYLATION 2...		Lus10039097 [exp]	9.6	0.8656
AT5G41050			Pollen Ole e 1 allergen and ex...		Lus10041541 [exp]	11.0	0.8125
AT5G63310		NDPK1A, NDPKIAI...	NDP KINASE 1A, NUCLEOSIDE DIPH...		Lus10014787 [exp]	15.6	0.8118

Compare expression of checked genes

Lus10041152 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.