Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G14430 285 / 1e-97 PEC12, IBR10, ECHIB, ATECI2 DELTA\(3\), DELTA\(2\)-ENOYL COA ISOMERASE 2, ENOYL-COA HYDRATASE/ISOMERASE B, ARABIDOPSIS THALIANA DELTA\(3\), DELTA\(2\)-ENOYL COA ISOMERASE 2, indole-3-butyric acid response 10 (.1) AT4G14440 279 / 2e-95 HCD1, ATECI3 DELTA\(3\), DELTA\(2\)-ENOYL COA ISOMERASE 3, ARABIDOPSIS THALIANA DELTA\(3\), DELTA\(2\)-ENOYL COA ISOMERASE 3, 3-hydroxyacyl-CoA dehydratase 1 (.1) AT1G65520 181 / 5e-57 PEC11, ECHIC, ATECI1 "delta\(3\), delta\(2\)-enoyl CoA isomerase 1", ENOYL-COA HYDRATASE/ISOMERASE C, ARABIDOPSIS THALIANA DELTA\(3\), DELTA\(2\)-ENOYL COA ISOMERASE 1, delta(3), delta(2)-enoyl CoA isomerase 1 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10041154 [exp] 357 / 4e-126 AT4G14440 306 / 5e-106 DELTA\(3\), DELTA\(2\)-ENOYL COA ISOMERASE 3, ARABIDOPSIS THALIANA DELTA\(3\), DELTA\(2\)-ENOYL COA ISOMERASE 3, 3-hydroxyacyl-CoA dehydratase 1 (.1) Lus10022199 [exp] 337 / 4e-118 AT4G14430 310 / 2e-107 DELTA\(3\), DELTA\(2\)-ENOYL COA ISOMERASE 2, ENOYL-COA HYDRATASE/ISOMERASE B, ARABIDOPSIS THALIANA DELTA\(3\), DELTA\(2\)-ENOYL COA ISOMERASE 2, indole-3-butyric acid response 10 (.1) Lus10021207 [exp] 330 / 1e-115 AT4G14430 303 / 1e-104 DELTA\(3\), DELTA\(2\)-ENOYL COA ISOMERASE 2, ENOYL-COA HYDRATASE/ISOMERASE B, ARABIDOPSIS THALIANA DELTA\(3\), DELTA\(2\)-ENOYL COA ISOMERASE 2, indole-3-butyric acid response 10 (.1) Lus10005159 [exp] 212 / 1e-68 AT1G65520 279 / 4e-95 "delta\(3\), delta\(2\)-enoyl CoA isomerase 1", ENOYL-COA HYDRATASE/ISOMERASE C, ARABIDOPSIS THALIANA DELTA\(3\), DELTA\(2\)-ENOYL COA ISOMERASE 1, delta(3), delta(2)-enoyl CoA isomerase 1 (.1) Lus10001701 [exp] 193 / 1e-61 AT1G65520 270 / 5e-92 "delta\(3\), delta\(2\)-enoyl CoA isomerase 1", ENOYL-COA HYDRATASE/ISOMERASE C, ARABIDOPSIS THALIANA DELTA\(3\), DELTA\(2\)-ENOYL COA ISOMERASE 1, delta(3), delta(2)-enoyl CoA isomerase 1 (.1) Lus10005158 [exp] 94 / 4e-24 AT1G65520 140 / 1e-42 "delta\(3\), delta\(2\)-enoyl CoA isomerase 1", ENOYL-COA HYDRATASE/ISOMERASE C, ARABIDOPSIS THALIANA DELTA\(3\), DELTA\(2\)-ENOYL COA ISOMERASE 1, delta(3), delta(2)-enoyl CoA isomerase 1 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G073700 [exp] 304 / 2e-105 AT4G14430 293 / 5e-101 DELTA\(3\), DELTA\(2\)-ENOYL COA ISOMERASE 2, ENOYL-COA HYDRATASE/ISOMERASE B, ARABIDOPSIS THALIANA DELTA\(3\), DELTA\(2\)-ENOYL COA ISOMERASE 2, indole-3-butyric acid response 10 (.1) Potri.008G164900 [exp] 292 / 2e-100 AT4G14430 280 / 1e-95 DELTA\(3\), DELTA\(2\)-ENOYL COA ISOMERASE 2, ENOYL-COA HYDRATASE/ISOMERASE B, ARABIDOPSIS THALIANA DELTA\(3\), DELTA\(2\)-ENOYL COA ISOMERASE 2, indole-3-butyric acid response 10 (.1) Potri.010G207800 [exp] 209 / 5e-68 AT1G65520 276 / 3e-94 "delta\(3\), delta\(2\)-enoyl CoA isomerase 1", ENOYL-COA HYDRATASE/ISOMERASE C, ARABIDOPSIS THALIANA DELTA\(3\), DELTA\(2\)-ENOYL COA ISOMERASE 1, delta(3), delta(2)-enoyl CoA isomerase 1 (.1) Potri.008G052801 [exp] 76 / 4e-17 AT1G65520 140 / 3e-42 "delta\(3\), delta\(2\)-enoyl CoA isomerase 1", ENOYL-COA HYDRATASE/ISOMERASE C, ARABIDOPSIS THALIANA DELTA\(3\), DELTA\(2\)-ENOYL COA ISOMERASE 1, delta(3), delta(2)-enoyl CoA isomerase 1 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0127 [flax] [poplar] ClpP_crotonase PF00378 [flax] [poplar] ECH_1 Enoyl-CoA hydratase/isomerase
Representative CDS sequence Show only first row Show all	>Lus10041153 pacid=23179953 polypeptide=Lus10041153 locus=Lus10041153.g ID=Lus10041153.BGIv1.0 annot-version=v1.0 ATGTCCACCCTAGAGAAGCACGGCGACATATTCCTCCTCACTCTAACCGGCGAAAGCGACGACCACCGTCTCAACCCGGCGCTCATCGCCTCCGTACTCT CATCTCTCCGCGAAGCCAAATCGCAAGCCACGCGAGGCTCCGTCCTTATCACAACATCACAAGGCAAGTTCTTCTCCAACGGCTTCGACCTCGCCTGGGC CCAATCCGCAGGTTCCAGATCCAAGGCCGCTCAGCGCCTCCACCAATTGGTGGAATCATTCCGCCCCGTTGTAGCAGAGCTGATCTCCCTTCCCATGCCT ACCGTCGCCGTCGTCCAAGGTCACGCCGCTGCTGCCGGACTGGCGCTGGCTCTGAGCCACGACTACGTTCTGATGAGGAGCGACAAGGGAGTTCTGTACA TGAGCGAGGTGGACTTAGGGCTTCCGCTGCCGGACTATTTCTCGGCGCTGTTCCGGGCCAAAATCGGCTCGGCGACTGCCCGGCGCGACGTGCTTCTGAG AGGGACGAAATTGAAGGCAGGGGAGGCTGTCCAACTAGGGATAGTTGATGAGGCGCATGATAGCGAGGAGAAGTTGAGGGAGGCTGGAATGCGCCTTGGG GAGCAGCTCGGATCGAGGAAGTGGGACGGCGTCGTTTATAAGGAGATAAGGAGGAGCCTGTATTCAGCTGAGCTATGTAGTATTTTAGACAAACCAGGAG GCTCTGAAACTGGGCTTGATGGAAAGGCCCAATAA
AA sequence Show only first row Show all	>Lus10041153 pacid=23179953 polypeptide=Lus10041153 locus=Lus10041153.g ID=Lus10041153.BGIv1.0 annot-version=v1.0 MSTLEKHGDIFLLTLTGESDDHRLNPALIASVLSSLREAKSQATRGSVLITTSQGKFFSNGFDLAWAQSAGSRSKAAQRLHQLVESFRPVVAELISLPMP TVAVVQGHAAAAGLALALSHDYVLMRSDKGVLYMSEVDLGLPLPDYFSALFRAKIGSATARRDVLLRGTKLKAGEAVQLGIVDEAHDSEEKLREAGMRLG EQLGSRKWDGVVYKEIRRSLYSAELCSILDKPGGSETGLDGKAQ

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G14440		HCD1, ATECI3	DELTA\(3\), DELTA\(2\)-ENOYL C...		Lus10041153 [exp]	0	1
AT2G28160	bHLH	ATFIT1, ATBHLH2...	ARABIDOPSIS FE-DEFICIENCY INDU...		Lus10021416 [exp]	32.2	0.6536
AT2G26470			unknown protein		Lus10025870 [exp]	48.0	0.6440
AT5G08790	NAC	ATAF2, ANAC081	Arabidopsis NAC domain contain...		Lus10003848 [exp]	66.4	0.6376
AT2G24430	NAC	ANAC039, ANAC03...	Arabidopsis NAC domain contain...		Lus10020165 [exp]	85.9	0.6689
AT1G05850		CTL1, HOT2, ERH...	POM-POM1, SENSITIVE TO HOT TEM...		Lus10041282 [exp]	117.5	0.6376

Compare expression of checked genes

Lus10041153 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.