Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G14430 271 / 2e-92 PEC12, IBR10, ECHIB, ATECI2 DELTA\(3\), DELTA\(2\)-ENOYL COA ISOMERASE 2, ENOYL-COA HYDRATASE/ISOMERASE B, ARABIDOPSIS THALIANA DELTA\(3\), DELTA\(2\)-ENOYL COA ISOMERASE 2, indole-3-butyric acid response 10 (.1) AT4G14440 261 / 2e-88 HCD1, ATECI3 DELTA\(3\), DELTA\(2\)-ENOYL COA ISOMERASE 3, ARABIDOPSIS THALIANA DELTA\(3\), DELTA\(2\)-ENOYL COA ISOMERASE 3, 3-hydroxyacyl-CoA dehydratase 1 (.1) AT1G65520 165 / 1e-50 PEC11, ECHIC, ATECI1 "delta\(3\), delta\(2\)-enoyl CoA isomerase 1", ENOYL-COA HYDRATASE/ISOMERASE C, ARABIDOPSIS THALIANA DELTA\(3\), DELTA\(2\)-ENOYL COA ISOMERASE 1, delta(3), delta(2)-enoyl CoA isomerase 1 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10022199 [exp] 350 / 3e-123 AT4G14430 310 / 2e-107 DELTA\(3\), DELTA\(2\)-ENOYL COA ISOMERASE 2, ENOYL-COA HYDRATASE/ISOMERASE B, ARABIDOPSIS THALIANA DELTA\(3\), DELTA\(2\)-ENOYL COA ISOMERASE 2, indole-3-butyric acid response 10 (.1) Lus10021207 [exp] 343 / 1e-120 AT4G14430 303 / 1e-104 DELTA\(3\), DELTA\(2\)-ENOYL COA ISOMERASE 2, ENOYL-COA HYDRATASE/ISOMERASE B, ARABIDOPSIS THALIANA DELTA\(3\), DELTA\(2\)-ENOYL COA ISOMERASE 2, indole-3-butyric acid response 10 (.1) Lus10041153 [exp] 343 / 2e-120 AT4G14440 306 / 4e-106 DELTA\(3\), DELTA\(2\)-ENOYL COA ISOMERASE 3, ARABIDOPSIS THALIANA DELTA\(3\), DELTA\(2\)-ENOYL COA ISOMERASE 3, 3-hydroxyacyl-CoA dehydratase 1 (.1) Lus10005159 [exp] 181 / 1e-56 AT1G65520 279 / 4e-95 "delta\(3\), delta\(2\)-enoyl CoA isomerase 1", ENOYL-COA HYDRATASE/ISOMERASE C, ARABIDOPSIS THALIANA DELTA\(3\), DELTA\(2\)-ENOYL COA ISOMERASE 1, delta(3), delta(2)-enoyl CoA isomerase 1 (.1) Lus10001701 [exp] 173 / 1e-53 AT1G65520 270 / 5e-92 "delta\(3\), delta\(2\)-enoyl CoA isomerase 1", ENOYL-COA HYDRATASE/ISOMERASE C, ARABIDOPSIS THALIANA DELTA\(3\), DELTA\(2\)-ENOYL COA ISOMERASE 1, delta(3), delta(2)-enoyl CoA isomerase 1 (.1) Lus10005158 [exp] 84 / 2e-20 AT1G65520 140 / 1e-42 "delta\(3\), delta\(2\)-enoyl CoA isomerase 1", ENOYL-COA HYDRATASE/ISOMERASE C, ARABIDOPSIS THALIANA DELTA\(3\), DELTA\(2\)-ENOYL COA ISOMERASE 1, delta(3), delta(2)-enoyl CoA isomerase 1 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G073700 [exp] 288 / 5e-99 AT4G14430 293 / 5e-101 DELTA\(3\), DELTA\(2\)-ENOYL COA ISOMERASE 2, ENOYL-COA HYDRATASE/ISOMERASE B, ARABIDOPSIS THALIANA DELTA\(3\), DELTA\(2\)-ENOYL COA ISOMERASE 2, indole-3-butyric acid response 10 (.1) Potri.008G164900 [exp] 272 / 1e-92 AT4G14430 280 / 1e-95 DELTA\(3\), DELTA\(2\)-ENOYL COA ISOMERASE 2, ENOYL-COA HYDRATASE/ISOMERASE B, ARABIDOPSIS THALIANA DELTA\(3\), DELTA\(2\)-ENOYL COA ISOMERASE 2, indole-3-butyric acid response 10 (.1) Potri.010G207800 [exp] 184 / 2e-58 AT1G65520 276 / 3e-94 "delta\(3\), delta\(2\)-enoyl CoA isomerase 1", ENOYL-COA HYDRATASE/ISOMERASE C, ARABIDOPSIS THALIANA DELTA\(3\), DELTA\(2\)-ENOYL COA ISOMERASE 1, delta(3), delta(2)-enoyl CoA isomerase 1 (.1) Potri.008G052801 [exp] 78 / 4e-18 AT1G65520 140 / 3e-42 "delta\(3\), delta\(2\)-enoyl CoA isomerase 1", ENOYL-COA HYDRATASE/ISOMERASE C, ARABIDOPSIS THALIANA DELTA\(3\), DELTA\(2\)-ENOYL COA ISOMERASE 1, delta(3), delta(2)-enoyl CoA isomerase 1 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0127 [flax] [poplar] ClpP_crotonase PF00378 [flax] [poplar] ECH_1 Enoyl-CoA hydratase/isomerase
Representative CDS sequence Show only first row Show all	>Lus10041154 pacid=23180000 polypeptide=Lus10041154 locus=Lus10041154.g ID=Lus10041154.BGIv1.0 annot-version=v1.0 ATGTGCACGCTAGAGAAGCGCGGGGATATCTTCCTCCTCACTTTGACCGGCGAAAACGACGATCACCGCCTGAGTCCATCCCTAATTGCCTCCCTTCTCT CGGCACTCCGCGAGGCAAAGTCGCAGGCTACTCGAGGCTCGGTCTTCATCACCGCATCACAAGGCAAGTTCTTCTCCAACGGGTTCGATCTCGCATGGGC CAGAGCTGCCGAATCCGGATCCAAGGCCGCCGAGCGCCTCCACCAAATGGTCGAATCGTTCCGACCGATCGTGGCGGAGCTTATCTCCCTTCCTATGCCC ACCGTCGCCGTCGTCCAGGGTCACGCCGCCGCATCCGGATTGGCGCTGGCCCTGAGTCATGATTACGTGCTGATGAGGAGCGATAAGGGGGTTCTGTACA TGAGCGAGGTGGATATTGGGCTTCCTCTTCCGGACTACTTCTCCGTGCTGTTCCGGGCCAAGCTCGGGTCGGTCAGCGCCCGGCGGGATGTGCTGTTGAG AGGGCTGAAGGTCAAGGCAGCTGAGGCGGTGAGTGCAGGGATCGTGGATGAGGCGCACGATAGCGAGGAGAAGTTGAGGGACGCTGGAATGCGCCTGTCG GAGGAGCTGGCGTCGAGGAAGTGGGACGGCGTCGTTTACAAGGAGATAAGGAAGAGCCTGTATCCTGAGCTTTGCCACATTCTGGGCTTGGATATTGCCA AACCAGCGATCTCCAAGCTATAA
AA sequence Show only first row Show all	>Lus10041154 pacid=23180000 polypeptide=Lus10041154 locus=Lus10041154.g ID=Lus10041154.BGIv1.0 annot-version=v1.0 MCTLEKRGDIFLLTLTGENDDHRLSPSLIASLLSALREAKSQATRGSVFITASQGKFFSNGFDLAWARAAESGSKAAERLHQMVESFRPIVAELISLPMP TVAVVQGHAAASGLALALSHDYVLMRSDKGVLYMSEVDIGLPLPDYFSVLFRAKLGSVSARRDVLLRGLKVKAAEAVSAGIVDEAHDSEEKLRDAGMRLS EELASRKWDGVVYKEIRKSLYPELCHILGLDIAKPAISKL

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G14440		HCD1, ATECI3	DELTA\(3\), DELTA\(2\)-ENOYL C...		Lus10041154 [exp]	0	1
AT1G78100		AUF1	auxin up-regulated f-box prote...		Lus10041123 [exp]	5.5	0.9193
AT1G08710			F-box family protein (.1.2)		Lus10009519 [exp]	6.3	0.9086
AT5G48150	GRAS	PAT1	phytochrome a signal transduct...		Lus10003772 [exp]	8.4	0.8889
AT1G01720	NAC	ATAF1, ANAC002	Arabidopsis NAC domain contain...		Lus10025690 [exp]	8.5	0.9096
AT2G02800		Kin2, APK2B	protein kinase 2B (.1.2)		Lus10021489 [exp]	9.4	0.9217
AT2G35330			RING/U-box superfamily protein...		Lus10004557 [exp]	10.1	0.8890
AT1G11905			B-cell receptor-associated pro...		Lus10020025 [exp]	12.8	0.9216
AT2G32070			Polynucleotidyl transferase, r...		Lus10018330 [exp]	12.8	0.9166
AT1G67000			Protein kinase superfamily pro...		Lus10014923 [exp]	14.0	0.9046
AT1G70520		ASG6, CRK2	ALTERED SEED GERMINATION 6, cy...		Lus10030901 [exp]	15.2	0.9168

Compare expression of checked genes

Lus10041154 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.