Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	No hit found
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10013870 [exp] 168 / 3e-49 AT5G44750 1025 / 0.0 ARABIDOPSIS THALIANA HOMOLOG OF REVERSIONLESS 1, DNA-directed DNA polymerases (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G094400 [exp] 58 / 2e-10 AT5G44750 1071 / 0.0 ARABIDOPSIS THALIANA HOMOLOG OF REVERSIONLESS 1, DNA-directed DNA polymerases (.1.2)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10041155 pacid=23179824 polypeptide=Lus10041155 locus=Lus10041155.g ID=Lus10041155.BGIv1.0 annot-version=v1.0 ATGAATCTGGATTCATCTGTGTTAGCTGGAACAAGTATTAGTGGTGATTTTTCTGAAATGCATGAATCCATAAGTGTTACCACTGACGAGAATCCACAAC TTGATAGTCAGAAGTACGGTATTGAGGTGCCAAGCGGCAGCAAATCGTCAGATGTAAGGGCTGAAGTACCTGGCGACTCTGCCACGGAGAGGGAAACAGA TGTAGTTAACATAGTTCATCCTACTCCCGATAATCTCTCTGGCTCAATCAGCATGCAAGGTATGCAGAATCAAAGTGAAGGAGGAACGAATACAAGAAGT GTTGGAATCTCTAATCAACGTCACTCAACGCTCAGGGATCCCAATTTCATGGACTATTATTTCAAGCTGGGCCATCCTGGACTTGAACCAGAGACCTCGC CCGTGAAGTAA
AA sequence Show only first row Show all	>Lus10041155 pacid=23179824 polypeptide=Lus10041155 locus=Lus10041155.g ID=Lus10041155.BGIv1.0 annot-version=v1.0 MNLDSSVLAGTSISGDFSEMHESISVTTDENPQLDSQKYGIEVPSGSKSSDVRAEVPGDSATERETDVVNIVHPTPDNLSGSISMQGMQNQSEGGTNTRS VGISNQRHSTLRDPNFMDYYFKLGHPGLEPETSPVK

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
					Lus10041155 [exp]	0	1
AT5G53550		ATYSL3, YSL3	YELLOW STRIPE like 3 (.1.2)		Lus10022358 [exp]	3.7	0.7954
AT5G47840		AMK2	adenosine monophosphate kinase...		Lus10009228 [exp]	6.9	0.7860
					Lus10026719 [exp]	14.1	0.7544
AT3G44820			Phototropic-responsive NPH3 fa...		Lus10019522 [exp]	17.5	0.7697
AT1G70670		AtCLO4	Arabidopsis thaliana caleosin ...		Lus10041446 [exp]	23.7	0.7737
AT2G23810		TET8	tetraspanin8 (.1)		Lus10008891 [exp]	24.2	0.7683
AT4G33920			Protein phosphatase 2C family ...		Lus10002110 [exp]	26.3	0.7740
AT1G25375			Metallo-hydrolase/oxidoreducta...		Lus10005109 [exp]	26.5	0.7225
AT3G48040		ROP10, ARAC8, A...	Arabidopsis RAC-like 8, RHO-re...		Lus10034876 [exp]	27.7	0.7378
AT5G41210		GSTU12, GST10, ...	glutathione S-transferase THET...		Lus10008020 [exp]	33.2	0.7054

Compare expression of checked genes

Lus10041155 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.