Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G43530 1163 / 0 Helicase protein with RING/U-box domain (.1) AT5G22750 875 / 0 RAD5A, RAD5 DNA/RNA helicase protein (.1) AT5G05130 349 / 1e-104 DNA/RNA helicase protein (.1) AT1G11100 325 / 2e-93 SNF2 domain-containing protein / helicase domain-containing protein / zinc finger protein-related (.1.2) AT1G61140 320 / 3e-92 EDA16 embryo sac development arrest 16, SNF2 domain-containing protein / helicase domain-containing protein / zinc finger protein-related (.1.2.3) AT1G50410 315 / 2e-91 SNF2 domain-containing protein / helicase domain-containing protein / zinc finger protein-related (.1) AT1G02670 300 / 7e-89 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) AT3G20010 299 / 2e-85 SNF2 domain-containing protein / helicase domain-containing protein / zinc finger protein-related (.1) AT1G05120 288 / 4e-83 Helicase protein with RING/U-box domain (.1) AT3G16600 268 / 1e-77 SNF2 domain-containing protein / helicase domain-containing protein / zinc finger protein-related (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10043365 [exp] 812 / 0 AT5G22750 1445 / 0.0 DNA/RNA helicase protein (.1) Lus10039001 [exp] 344 / 6e-103 AT5G05130 1002 / 0.0 DNA/RNA helicase protein (.1) Lus10041008 [exp] 323 / 4e-94 AT1G50410 1060 / 0.0 SNF2 domain-containing protein / helicase domain-containing protein / zinc finger protein-related (.1) Lus10011211 [exp] 322 / 2e-92 AT1G61140 959 / 0.0 embryo sac development arrest 16, SNF2 domain-containing protein / helicase domain-containing protein / zinc finger protein-related (.1.2.3) Lus10013452 [exp] 304 / 3e-85 AT1G50410 1003 / 0.0 SNF2 domain-containing protein / helicase domain-containing protein / zinc finger protein-related (.1) Lus10030044 [exp] 296 / 2e-84 AT1G05120 1047 / 0.0 Helicase protein with RING/U-box domain (.1) Lus10027296 [exp] 205 / 8e-58 AT5G05130 470 / 1e-159 DNA/RNA helicase protein (.1) Lus10018465 [exp] 218 / 1e-57 AT1G61140 546 / 2e-175 embryo sac development arrest 16, SNF2 domain-containing protein / helicase domain-containing protein / zinc finger protein-related (.1.2.3) Lus10019523 [exp] 180 / 9e-51 AT5G22750 257 / 3e-79 DNA/RNA helicase protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G083400 [exp] 1148 / 0 AT5G43530 1342 / 0.0 Helicase protein with RING/U-box domain (.1) Potri.004G189400 [exp] 841 / 0 AT5G22750 1506 / 0.0 DNA/RNA helicase protein (.1) Potri.006G035700 [exp] 319 / 1e-93 AT5G05130 1117 / 0.0 DNA/RNA helicase protein (.1) Potri.007G000700 [exp] 315 / 2e-91 AT1G50410 1083 / 0.0 SNF2 domain-containing protein / helicase domain-containing protein / zinc finger protein-related (.1) Potri.014G154600 [exp] 296 / 1e-85 AT1G05120 1058 / 0.0 Helicase protein with RING/U-box domain (.1) Potri.004G037700 [exp] 288 / 3e-80 AT1G61140 1007 / 0.0 embryo sac development arrest 16, SNF2 domain-containing protein / helicase domain-containing protein / zinc finger protein-related (.1.2.3) Potri.016G033700 [exp] 277 / 1e-78 AT5G05130 710 / 0.0 DNA/RNA helicase protein (.1) Potri.016G033800 [exp] 269 / 5e-76 AT5G05130 650 / 0.0 DNA/RNA helicase protein (.1) Potri.011G046400 [exp] 270 / 2e-74 AT1G61140 958 / 0.0 embryo sac development arrest 16, SNF2 domain-containing protein / helicase domain-containing protein / zinc finger protein-related (.1.2.3) Potri.016G034000 [exp] 263 / 4e-74 AT5G05130 700 / 0.0 DNA/RNA helicase protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF08797 [flax] [poplar] HIRAN HIRAN domain CL0023 [flax] [poplar] P-loop_NTPase PF00271 [flax] [poplar] Helicase_C Helicase conserved C-terminal domain CL0229 [flax] [poplar] RING PF00097 [flax] [poplar] zf-C3HC4 Zinc finger, C3HC4 type (RING finger) CL0023 [flax] [poplar] P-loop_NTPase PF00176 [flax] [poplar] SNF2_N SNF2 family N-terminal domain
Representative CDS sequence Show only first row Show all	>Lus10041156 pacid=23179856 polypeptide=Lus10041156 locus=Lus10041156.g ID=Lus10041156.BGIv1.0 annot-version=v1.0 ATGGAGCTTTCAACCGCACCAGATGAAGATCCCGTCACTAAGATCTACAAAGGTCTTTACCAGGACATCCTCGAAGACGACAAGGCCGTCGTCGACGTCC GCCGAACTGCCGTCGGAAACAGATTCCAAATCCACGTCCAGCTCAAGGAAGAAGAGCAACACGGCGTTTCTGCTATAAAATCAGAGGAAGGGAAATCTAT TGGTTCTGATAATTCGATGGCCTCCGTGAAAGAGGAGCCGCTAGATCTGCCTCTAGAAGATACAGAAATGAAATCCGCAGAGGAGCTCGAGCAAACCGAT GCTCAGGTAAAGCAAGAGAAAGTTGAAGAATCCGACGAGAAGGTAGAGGAGGAGAGCTGTGGTAAGGAACATAAACCTTTCGGTATTGCCATTGCTGCGG TTCATTTAACAGTGATTCCAGCCCAGGAAGCTGGCGATACGGAAATGGAAGCCGAAGATATGGTTGAAGCAGCTGAGATTCTGGCCGGAGGGATGCAGAC GGTGAATGCGGGGCCCTTCAAAGCAGAGACAGTGGCGAAACAAGAACATCCTGAAGTGTTAGCGAGGACGAAAGTGGAGGAATCGATCAAAACAGAGACG GCGAAGGAGTCAGAGACGGTAATATTGATCGACGAGAAGCCTGACGAAACTCTGAAAGAAAAACCCACAGCGCCGCCGCCAAAGAGTCCTGAACCGCCGG GGCCAAGAGTGGTGGATGGCCGCCTGGTGGAAGATGGGGATTTCCCTGAACAGGATGACTGGTATTTGGTAGGGAGAACAATGGTGACTGGAATTTCTAC TTCGAAAGGAAGGAAGCTGGTTGATAATGAGATTGTGTATTTCAAGTTTTCAAAGTCAAGTTCCAAATCCAATGCTCAGTGGATTATCCGCTTCTCCACC AAACGGTCCGGCGAGGTTGGTCGGCTTCCGATGGAATGGGGGAAGTGTGTTGTTCCAGTAGTTAGTTCCGGCAAGGTTAAGGTACTCGGTAGATGCGTGG CTGCACCGCCGACTCTTCACATAATGCAAGAGGTCTTCTTATACGTGAGTTTCTACATTCACCGTTCGATCTTCATAGCGTTGGAGAGTTCAACATGGTC GCTGGAGTCAAACACATACGTTGACCCCCAAACTTATCCTCTCCTTAGTTTGTTTAAGTTGCTCAATCTCAAACCATTCCAGAATGCTGAGTTCACACCG TCGGAGATTGAATCAAGGAAACACGGGTTGAAGCTTGAGCAAGAGGATTCAGATGCTGCGGTATTGCATATGGTGAAGAAGAGGAGAGGTGGTGTTCAAG CTGTAGATGAAGACAAGGATGAACAAGCATTTTGCGAGTCAACTCTGAATAAGATTGTTGGTACTGCTGATGTTTATGATTTAAAGGAAATGGAGGCACC GCGGACTTTAACATGCCATTTAAAGCCATACCAGAAACAGGCTCTTAATTGGATGTGTGAATCAGAAGTGGGGATGAACGATGAAGAAACTGCAAGAATG CTTCATCCTTGCTGGGCTGCCTACAATATATGTGACGAAAGGACAACCTCTATATACTTGAATATTTTCTCTGGCGAAGCTACAACACAATTCCCAGCTG CAACTCAGATCACTAAGGGAGGGATTTTGGCCGATGCAATGGGTCTTGGAAAGACTGTTATGACGATTGCCCTATTACTTGCAAGACCAAGGTCTCGAGG ACAAGGGGGCACTCTGATTGTTTGTCCCATGGCCTTACTCCACCAATGGAAAGATGAGCTTGAGACCCATGCAATGCCCGGCAGTTTATCTGTCTTTGTT CATTATGGCGGCGAAAAAATGCATAATTCAAGCCTCATTTCTGGATATGATGTGATCTTGACTACTTATGGTGTCCTTATGTCAGCTTATAAACAAGGAG GGGAGAACAGCATTTTTCACTCGGTAGATTGGTTTAGGGTTGTTTTGGATGAGGCTCACAGTATTAAGAACTGGAAGTCACTAGGTGCTCAAGCCACCTT CAAGCTGAGGTCACACTACCGCTGGTGCCTCACAGGGACACCTCTTCAGAACAACCTGGAAGACATCTACAGCCTTCTATGTTTCTTGCATGTTCAGCCC TGGTGCAACTGGGCATGGTGGAGCAAATTGATCCATAGACCATATGAGAATGGAGATCCAAGAGCCCTTAAACTGATGAAGGCCATTCTGAGGCCACTGA TGTTGAGGAGAACCAAGGAAACCAAGGATAAATACGGAAGGCCAATTCTCGTTCTTCCGCCAACTGAAATTCAACTTGTCAAGTGTGTGCCATCAGAAGC CGAACGTGACTTTTATCTAGCCCTCTTCCGGAGACAAAAAGATCAATTTGAGAACTTGGTGGCACAAGGGACAGCTCTTAACAACTACGCCTCAATCCTT GAGCTCCTGCTTCGGCTGAGGCAGTGCTGCAACCATCCGTATCTTGTCACAAGTCAATTTGATACCAAGAAGTACTGGGACTTGCACAAGCTTGCCAAAA GATTCTTTGAAGAATCTGACGATTCCATCCCAGAGGTATCCACAGAAGAGACTGCTGATGAAGGAGTCCTTCAAGGTCAACAATCTGAATGTCCAATCTG TCTAGAGTCAGCGGACGACCCGGTATTCACGCCATGTAAGCATAGGATGGGTAGGGAATGTCTACTTGCCAGCTGGAGAAGTGAAACTGGTGGGCCATGC CCTCTGTGTCGAGCTCAAGTGACCCAGAGTTCACTGATGACCTGTCCATCAGGGACGAAGTTCACGGTTAATTTAAACAAGAACTGGAAAGGGTCGTCAA AGATCTCAATGCTCCTGGAATGCTTGAAAAGGATTGACCTTTGCAGTCGTGGAGAGAAAAGCATTGTTTTTAGCCAGTGGACTACGTTCCTTGACATCCT TGAGATCCCACTGAGAGAGAAAAAGATCGAGTTCTTGAGGTTTGATGGGAAGCTTTCCCAGAAGAACAGGGAGAAAGTTCTCAAGGAGTTCAACGAAAGC AGCCATAAAAAGGTTCTGTTGATGTCTCTGAGAGCTGGTGGGGTGGGGCTGAATCTAACTTCTGCATCAAATGTCTTTATAATGGATCCATGGTGGAATC CAGCAGTGGAGGAGCAGGCGATCATGCGAATCCACAGGATAGGACAAAAGAGAACCGTGAAAGTCAGAAGATTCATCGTATCGGATACCGTGGAGGAGCG GCTGCTGCAAGTTCAGGCGAAGAAGGAGAAAATGATAGCGGGAGCTCTCACTGACGATGATGTCCGTACTGCCAGGCTCGAGGAGCTCAAAATGCTATTT AGATGA
AA sequence Show only first row Show all	>Lus10041156 pacid=23179856 polypeptide=Lus10041156 locus=Lus10041156.g ID=Lus10041156.BGIv1.0 annot-version=v1.0 MELSTAPDEDPVTKIYKGLYQDILEDDKAVVDVRRTAVGNRFQIHVQLKEEEQHGVSAIKSEEGKSIGSDNSMASVKEEPLDLPLEDTEMKSAEELEQTD AQVKQEKVEESDEKVEEESCGKEHKPFGIAIAAVHLTVIPAQEAGDTEMEAEDMVEAAEILAGGMQTVNAGPFKAETVAKQEHPEVLARTKVEESIKTET AKESETVILIDEKPDETLKEKPTAPPPKSPEPPGPRVVDGRLVEDGDFPEQDDWYLVGRTMVTGISTSKGRKLVDNEIVYFKFSKSSSKSNAQWIIRFST KRSGEVGRLPMEWGKCVVPVVSSGKVKVLGRCVAAPPTLHIMQEVFLYVSFYIHRSIFIALESSTWSLESNTYVDPQTYPLLSLFKLLNLKPFQNAEFTP SEIESRKHGLKLEQEDSDAAVLHMVKKRRGGVQAVDEDKDEQAFCESTLNKIVGTADVYDLKEMEAPRTLTCHLKPYQKQALNWMCESEVGMNDEETARM LHPCWAAYNICDERTTSIYLNIFSGEATTQFPAATQITKGGILADAMGLGKTVMTIALLLARPRSRGQGGTLIVCPMALLHQWKDELETHAMPGSLSVFV HYGGEKMHNSSLISGYDVILTTYGVLMSAYKQGGENSIFHSVDWFRVVLDEAHSIKNWKSLGAQATFKLRSHYRWCLTGTPLQNNLEDIYSLLCFLHVQP WCNWAWWSKLIHRPYENGDPRALKLMKAILRPLMLRRTKETKDKYGRPILVLPPTEIQLVKCVPSEAERDFYLALFRRQKDQFENLVAQGTALNNYASIL ELLLRLRQCCNHPYLVTSQFDTKKYWDLHKLAKRFFEESDDSIPEVSTEETADEGVLQGQQSECPICLESADDPVFTPCKHRMGRECLLASWRSETGGPC PLCRAQVTQSSLMTCPSGTKFTVNLNKNWKGSSKISMLLECLKRIDLCSRGEKSIVFSQWTTFLDILEIPLREKKIEFLRFDGKLSQKNREKVLKEFNES SHKKVLLMSLRAGGVGLNLTSASNVFIMDPWWNPAVEEQAIMRIHRIGQKRTVKVRRFIVSDTVEERLLQVQAKKEKMIAGALTDDDVRTARLEELKMLF R

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G43530			Helicase protein with RING/U-b...		Lus10041156 [exp]	0	1
AT5G27240			DNAJ heat shock N-terminal dom...		Lus10036769 [exp]	1.0	0.9718
AT3G42660			transducin family protein / WD...		Lus10021720 [exp]	3.7	0.9672
AT4G18425			Protein of unknown function (D...		Lus10013975 [exp]	5.4	0.9234
AT4G00020		BRCA2(IV), BRCA...	MATERNAL EFFECT EMBRYO ARREST ...		Lus10002857 [exp]	6.7	0.9584
AT1G65470		NFB2, FAS1	NUCLEOSOME/CHROMATIN ASSEMBLY ...		Lus10024521 [exp]	7.7	0.9519
AT1G65470		NFB2, FAS1	NUCLEOSOME/CHROMATIN ASSEMBLY ...		Lus10008729 [exp]	8.0	0.9470
AT3G25100		CDC45	cell division cycle 45 (.1)		Lus10011840 [exp]	8.1	0.9541
AT5G08020		ATRPA70B	ARABIDOPSIS THALIANA RPA70-KDA...		Lus10040517 [exp]	8.7	0.9581
AT5G49830		EXO84B	exocyst complex component 84B ...		Lus10024928 [exp]	10.0	0.8830
AT4G16807			unknown protein		Lus10010995 [exp]	10.8	0.9147

Compare expression of checked genes

Lus10041156 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.