Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G14455 151 / 6e-48 ATBS14B ,ATBET12 ARABIDOPSIS THALIANA BET1P/SFT1P-LIKE PROTEIN 14BB, Target SNARE coiled-coil domain protein (.1) AT3G58170 149 / 7e-47 ATBET11, ATBS14A ARABIDOPSIS THALIANA BET1P/SFT1P-LIKE PROTEIN 14A, BET1P/SFT1P-like protein 14A (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10033868 [exp] 150 / 3e-47 AT3G58170 187 / 1e-62 ARABIDOPSIS THALIANA BET1P/SFT1P-LIKE PROTEIN 14A, BET1P/SFT1P-like protein 14A (.1) Lus10021879 [exp] 144 / 4e-45 AT4G14455 110 / 4e-32 ARABIDOPSIS THALIANA BET1P/SFT1P-LIKE PROTEIN 14BB, Target SNARE coiled-coil domain protein (.1) Lus10024876 [exp] 147 / 2e-41 AT3G12770 886 / 0.0 mitochondrial editing factor 22 (.1) Lus10000706 [exp] 118 / 3e-31 AT3G12770 878 / 0.0 mitochondrial editing factor 22 (.1) Lus10014756 [exp] 70 / 3e-14 AT5G11010 440 / 2e-152 Pre-mRNA cleavage complex II protein family (.1.2.3) Lus10009926 [exp] 55 / 2e-10 AT3G58170 81 / 6e-21 ARABIDOPSIS THALIANA BET1P/SFT1P-LIKE PROTEIN 14A, BET1P/SFT1P-like protein 14A (.1) Lus10017686 [exp] 40 / 0.0003 AT1G28490 299 / 8e-103 syntaxin of plants 61 (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G074100 [exp] 187 / 6e-62 AT4G14455 147 / 1e-46 ARABIDOPSIS THALIANA BET1P/SFT1P-LIKE PROTEIN 14BB, Target SNARE coiled-coil domain protein (.1) Potri.002G041500 [exp] 145 / 1e-45 AT3G58170 202 / 7e-69 ARABIDOPSIS THALIANA BET1P/SFT1P-LIKE PROTEIN 14A, BET1P/SFT1P-like protein 14A (.1) Potri.005G221600 [exp] 144 / 2e-45 AT3G58170 206 / 4e-70 ARABIDOPSIS THALIANA BET1P/SFT1P-LIKE PROTEIN 14A, BET1P/SFT1P-like protein 14A (.1) Potri.008G164600 [exp] 42 / 1e-05 ND /
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF05739 [flax] [poplar] SNARE SNARE domain
Representative CDS sequence Show only first row Show all	>Lus10041158 pacid=23179917 polypeptide=Lus10041158 locus=Lus10041158.g ID=Lus10041158.BGIv1.0 annot-version=v1.0 ATGAGTTACCGGAGGTACGTTCAATCTGTCGGGGTTGATATACCGTTCAATCCTCGGATGTGCCCGTCTCTGATTCTCACCGGATCTGATTTGTCTTCAT TTTTCAGTTATCAGAACCGTAGCCGGGAGAATCGTTCTTCGAGATCAGCTCTGTTCGATGATGGCCTCGAAGAAGGCGGGCTGAGGGCTTCCTCTTCCTT CTCTTCCGAGATTAAGGAGCACGATAACGACAGAGCCATCGACAGTCTGCAAGATAGAGTTAGATTTCTCAAGAGTCTAACTGGTGACATACACGAGGAA GTAGAAACCCACAACCGTCTGCTAGATCGAATGGGGAATGGCATGGATGTTTCGAGGGGCGTAATATCTGGAACCATGGACAGATTCAAAGCGGTATTTG AGAAGAAATCCAGTCGAAGAACATGTGTGCTTGCTGGGTTCTTCGTGCTCTCCTTTCTTGCTATGTATTACCTCATCAGGTAA
AA sequence Show only first row Show all	>Lus10041158 pacid=23179917 polypeptide=Lus10041158 locus=Lus10041158.g ID=Lus10041158.BGIv1.0 annot-version=v1.0 MSYRRYVQSVGVDIPFNPRMCPSLILTGSDLSSFFSYQNRSRENRSSRSALFDDGLEEGGLRASSSFSSEIKEHDNDRAIDSLQDRVRFLKSLTGDIHEE VETHNRLLDRMGNGMDVSRGVISGTMDRFKAVFEKKSSRRTCVLAGFFVLSFLAMYYLIR

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G14455		ATBS14B ,ATBET1...	ARABIDOPSIS THALIANA BET1P/SFT...		Lus10041158 [exp]	0	1
AT5G53530		VPS26A	vacuolar protein sorting 26A (...		Lus10041291 [exp]	4.5	0.8174
AT5G64180			unknown protein		Lus10013157 [exp]	5.5	0.8177
AT4G31720		STG1, TAFII15, ...	TBP-ASSOCIATED FACTOR 10, SALT...		Lus10005077 [exp]	7.5	0.8211
AT5G42770			Maf-like protein (.1.2)		Lus10002531 [exp]	9.7	0.7868
AT1G12390			Cornichon family protein (.1)		Lus10009295 [exp]	10.2	0.8090
AT2G28430			unknown protein		Lus10022580 [exp]	10.6	0.7910
AT1G63460		ATGPX8	glutathione peroxidase 8 (.1)		Lus10008023 [exp]	12.0	0.8104
AT5G23550			Got1/Sft2-like vescicle transp...		Lus10039619 [exp]	16.1	0.8067
AT2G44610		RAB6, AtRABH1b,...	Ras-related small GTP-binding ...		Lus10019501 [exp]	16.9	0.7932
AT1G73177		APC13, BNS	anaphase-promoting complex 13,...		Lus10007286 [exp]	20.1	0.8200

Compare expression of checked genes

Lus10041158 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.