Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G23150 799 / 0 ETR2 ethylene response 2, Signal transduction histidine kinase, hybrid-type, ethylene sensor (.1) AT3G04580 787 / 0 EIN4 ETHYLENE INSENSITIVE 4, Signal transduction histidine kinase, hybrid-type, ethylene sensor (.1.2) AT1G04310 568 / 0 ERS2 ethylene response sensor 2 (.1) AT1G66340 461 / 8e-152 AtETR1, EIN1, ETR1 ETHYLENE RESPONSE 1, ETHYLENE RESPONSE, ETHYLENE INSENSITIVE 1, Signal transduction histidine kinase, hybrid-type, ethylene sensor (.1) AT2G40940 360 / 1e-114 ERS1 ethylene response sensor 1 (.1) AT5G35750 77 / 3e-14 AHK2 histidine kinase 2 (.1) AT1G27320 68 / 2e-11 AHK3 histidine kinase 3 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10021880 [exp] 1461 / 0 AT3G23150 857 / 0.0 ethylene response 2, Signal transduction histidine kinase, hybrid-type, ethylene sensor (.1) Lus10021212 [exp] 1199 / 0 AT3G23150 890 / 0.0 ethylene response 2, Signal transduction histidine kinase, hybrid-type, ethylene sensor (.1) Lus10022203 [exp] 1198 / 0 AT3G23150 882 / 0.0 ethylene response 2, Signal transduction histidine kinase, hybrid-type, ethylene sensor (.1) Lus10006574 [exp] 857 / 0 AT3G04580 957 / 0.0 ETHYLENE INSENSITIVE 4, Signal transduction histidine kinase, hybrid-type, ethylene sensor (.1.2) Lus10005517 [exp] 843 / 0 AT3G04580 957 / 0.0 ETHYLENE INSENSITIVE 4, Signal transduction histidine kinase, hybrid-type, ethylene sensor (.1.2) Lus10042549 [exp] 841 / 0 AT3G04580 944 / 0.0 ETHYLENE INSENSITIVE 4, Signal transduction histidine kinase, hybrid-type, ethylene sensor (.1.2) Lus10022009 [exp] 838 / 0 AT3G04580 937 / 0.0 ETHYLENE INSENSITIVE 4, Signal transduction histidine kinase, hybrid-type, ethylene sensor (.1.2) Lus10020778 [exp] 449 / 2e-147 AT1G66340 1220 / 0.0 ETHYLENE RESPONSE 1, ETHYLENE RESPONSE, ETHYLENE INSENSITIVE 1, Signal transduction histidine kinase, hybrid-type, ethylene sensor (.1) Lus10007357 [exp] 448 / 4e-147 AT1G66340 1211 / 0.0 ETHYLENE RESPONSE 1, ETHYLENE RESPONSE, ETHYLENE INSENSITIVE 1, Signal transduction histidine kinase, hybrid-type, ethylene sensor (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G074300 [exp] 1088 / 0 AT3G23150 877 / 0.0 ethylene response 2, Signal transduction histidine kinase, hybrid-type, ethylene sensor (.1) Potri.008G164400 [exp] 1031 / 0 AT3G23150 889 / 0.0 ethylene response 2, Signal transduction histidine kinase, hybrid-type, ethylene sensor (.1) Potri.013G044100 [exp] 867 / 0 AT3G04580 960 / 0.0 ETHYLENE INSENSITIVE 4, Signal transduction histidine kinase, hybrid-type, ethylene sensor (.1.2) Potri.019G014300 [exp] 858 / 0 AT3G04580 959 / 0.0 ETHYLENE INSENSITIVE 4, Signal transduction histidine kinase, hybrid-type, ethylene sensor (.1.2) Potri.001G204200 [exp] 455 / 1e-149 AT1G66340 1216 / 0.0 ETHYLENE RESPONSE 1, ETHYLENE RESPONSE, ETHYLENE INSENSITIVE 1, Signal transduction histidine kinase, hybrid-type, ethylene sensor (.1) Potri.003G032300 [exp] 451 / 4e-148 AT1G66340 1228 / 0.0 ETHYLENE RESPONSE 1, ETHYLENE RESPONSE, ETHYLENE INSENSITIVE 1, Signal transduction histidine kinase, hybrid-type, ethylene sensor (.1) Potri.002G201500 [exp] 401 / 5e-130 AT2G40940 897 / 0.0 ethylene response sensor 1 (.1) Potri.014G164700 [exp] 78 / 2e-14 AT5G35750 1359 / 0.0 histidine kinase 2 (.1) Potri.010G102900 [exp] 71 / 2e-12 AT2G01830 1381 / 0.0 WOODEN LEG 1, WOODEN LEG, CYTOKININ RESPONSE 1, ARABIDOPSIS HISTIDINE KINASE 4, CHASE domain containing histidine kinase protein (.1.2.3) Potri.003G171000 [exp] 71 / 3e-12 AT1G27320 1425 / 0.0 histidine kinase 3 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0161 [flax] [poplar] GAF PF01590 [flax] [poplar] GAF GAF domain CL0025 [flax] [poplar] His_Kinase_A PF00512 [flax] [poplar] HisKA His Kinase A (phospho-acceptor) domain CL0304 [flax] [poplar] CheY PF00072 [flax] [poplar] Response_reg Response regulator receiver domain CL0025 [flax] [poplar] His_Kinase_A PF02518 [flax] [poplar] HATPase_c Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase
Representative CDS sequence Show only first row Show all	>Lus10041159 pacid=23179721 polypeptide=Lus10041159 locus=Lus10041159.g ID=Lus10041159.BGIv1.0 annot-version=v1.0 ATGTTCAAATCATCAGCTCCACCTGGGTTGCTGCTGCTACTGCTGCTATCTTTCCTCTTCTTTGCATCCGTTTCTGCCAACGACAACAATGGCTTCCCTA GATGTAACTGCGACGAAGAGGAAGGCCAGTGGAGCATAGACAGCATCCTGGAATGCCAAAGGGTAGGAGATTTCTTGATAGCAGTAGCCTATTTCTCAAT TCCAATTGAGTTGCTCTACTTCATCAGCTGCTCCAACATCCCATTCAAATGGGTACTCGTAGAATTCATTGCCTTCATCGTTCTCTGTGGAATGACCCAC TTGCTCAACGGCTGGACTTATGGCCCCCACACTTTCCAGCTAATGGTTGCTGTCACAGTCTTCAAGATTCTAACCGCCTTAGTTTCATGTGCCACTGCCA TCACACTCTTCAGCTTGATCCCTTTGCTTCTCAAGGTTAAAGTCAGGGAATTCATGTTAAAAAAGAAAACTTGGGACTTGGGTAGGGAAGTTGGGATGAT TATGAGGCAGAGAGAAGCTGGATTGCATGTCAGAATGCTTACTCAGGAGATTCGAAAATCGCTCGATAGGCATACGATTCTGTACACTACCCTCGTCGAG CTTTCCAAGACCCTCGGGTTGCAGAATTGCGCGGTGTGGATGCCTAATGAGATGAGGACCGAGATGCATTTGACACACGAGCTGAATGGTGGGGACAGTT GTGTGATGATACCGACATCGGATCCTGATGTTGCGAGGATTAAGGGAAGTGGCTCAGTGAACATCCTCCGACTTAACTCGCCTTTATCCGCTGCTAGCCT TGGGAAATCGGCCGAGGAGTCGTCGGTGTCAGTGGCTGCTATAAGAATGCCGATCCTTCGTGTTTGCAATTTCAAAGGCGGGACTCCCGAGATGATCCAG GCATGCTATGCCATATTGGTGTTGGTACTTCCGGGCGGTCATCGGTCTTGGAGCAATCAAGAGCTGGAGATAATCAAAGTAGTGGCCGATCAGGTGGCAG TCGCGCTATCCCATGCAGCTGTACTTGAAGAATCACAGATCATGAGGGAGAAATTAGAGGAGCAGAATCGAGCTTTGCAGCAAGCCAAGATGGACGCTAT GATGGCTAGTAAAGCTAGGAATTCCTTTCAGAAGGTAATGAGCGATGGAATGAAAAGACCGATGCATTCCGTTTCGGGGTTGATTTCCTTGTTGCAGGAT GAAAGTTTAGATAGTGAGCAAAAGATTATTGTCGATACAATGATGAAAGCGAGCAATGTCTTGTCGATATTAATCGACGACGTGATGGGGATATCTACAA AGGGAGCCAGTGGGAGGTTTCCGGTGGAGGCCAACTCTTTCGGGTTGCATTCAATGATTACTGAAGCAGCTTGCCTCGCAAAGTGTTTGTGTGTTTATAA AGGATTTGGATTTACAATGGAAGTTGATAGGTCGTTGCCGGATCATGTCATGGGAGATGAGAGGAGGATCTTTCAGGTGATTCTGCATATGGTTGGGAAT TTGCTTGATGGGAATCGTAGAGGTGGCTCGGTTCTGTTTCGGGTTGTCATTGACCATGGGAGTCAAGAGAGGAATGATCAGAGATGGGGGGTGTGGAAGC AAAGTCCCTCGGATGGTCGTGTGTGCATAAGATTTGAAATTGGATTGACTTGTGCTGGTTCGGAACCGGAGGGATTCAGTTCAGCTATGCAGCTTGGTGG TAGAAGGTATACCAGTGATGGATTTGAGCAAGGGTTGAGCTTCACTGTCTGCAAAAAGCTTGTTCAGATGATGCAAGGCAACATCTGGGTATTCCCGAAC AACCAAGGTTTCGTCCAGAACATGGGACTTGTTCTACGATTCCAACTCCGTCAATCCATGGCAATCACCATAAGCGAACCGGGAGAATCTTCGGAGCATC ATCATCCGCCACATTCGAACTCATTCTGCACGGGCTTGCAAGTGGTCCTAGCAGAGTCGGACGATTTGAACAGAAGTGTTACGAAAAGGCTGCTAGAGAA GTTAGGGTGCTCGGTTACGGCCCTCTCATCAGGCTACGATTGCCTCAATGCCATATGCCAGGTCTCGTCGGCCTTCCAAGTCGTTCTCCTGGATCTTCAG CTGCCGGACTTGGACGGGTTCGAAGTTGCGGCCAAGATCAGAAAGTTCAGGAGCCGGAGTTGGCCGGTGATCCTAGCAATGACATCGAGCGGCGGGGAGG AAGATGGGTTGTGGGAGAAGTGTGTGCAGATGGGGATGAATGGGGTAATCAGGAAACCAATTTTGCTGCAAGGAATTGCCAATGAGCTACGGAGAGTGGT TCTGCAGGCAAACAGAGCGGTGTAA
AA sequence Show only first row Show all	>Lus10041159 pacid=23179721 polypeptide=Lus10041159 locus=Lus10041159.g ID=Lus10041159.BGIv1.0 annot-version=v1.0 MFKSSAPPGLLLLLLLSFLFFASVSANDNNGFPRCNCDEEEGQWSIDSILECQRVGDFLIAVAYFSIPIELLYFISCSNIPFKWVLVEFIAFIVLCGMTH LLNGWTYGPHTFQLMVAVTVFKILTALVSCATAITLFSLIPLLLKVKVREFMLKKKTWDLGREVGMIMRQREAGLHVRMLTQEIRKSLDRHTILYTTLVE LSKTLGLQNCAVWMPNEMRTEMHLTHELNGGDSCVMIPTSDPDVARIKGSGSVNILRLNSPLSAASLGKSAEESSVSVAAIRMPILRVCNFKGGTPEMIQ ACYAILVLVLPGGHRSWSNQELEIIKVVADQVAVALSHAAVLEESQIMREKLEEQNRALQQAKMDAMMASKARNSFQKVMSDGMKRPMHSVSGLISLLQD ESLDSEQKIIVDTMMKASNVLSILIDDVMGISTKGASGRFPVEANSFGLHSMITEAACLAKCLCVYKGFGFTMEVDRSLPDHVMGDERRIFQVILHMVGN LLDGNRRGGSVLFRVVIDHGSQERNDQRWGVWKQSPSDGRVCIRFEIGLTCAGSEPEGFSSAMQLGGRRYTSDGFEQGLSFTVCKKLVQMMQGNIWVFPN NQGFVQNMGLVLRFQLRQSMAITISEPGESSEHHHPPHSNSFCTGLQVVLAESDDLNRSVTKRLLEKLGCSVTALSSGYDCLNAICQVSSAFQVVLLDLQ LPDLDGFEVAAKIRKFRSRSWPVILAMTSSGGEEDGLWEKCVQMGMNGVIRKPILLQGIANELRRVVLQANRAV

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G23150		ETR2	ethylene response 2, Signal tr...		Lus10041159 [exp]	0	1
AT3G23150		ETR2	ethylene response 2, Signal tr...		Lus10021880 [exp]	1.0	0.9818
AT3G21360			2-oxoglutarate (2OG) and Fe(II...		Lus10038282 [exp]	2.0	0.9234
AT1G07710			Ankyrin repeat family protein ...		Lus10025289 [exp]	2.2	0.8919
AT1G75540	CO	LHUS, AtBBX21, ...	long hypocotyl under shade, B-...		Lus10028791 [exp]	4.6	0.8977
AT3G21760		HYR1	HYPOSTATIN RESISTANCE 1, UDP-G...		Lus10036088 [exp]	4.9	0.8923
AT5G58730			pfkB-like carbohydrate kinase ...		Lus10040669 [exp]	4.9	0.8643
AT5G25820			Exostosin family protein (.1)		Lus10023927 [exp]	6.7	0.8567
AT2G40940		ERS1	ethylene response sensor 1 (.1...		Lus10010310 [exp]	6.9	0.8771
AT2G36780			UDP-Glycosyltransferase superf...		Lus10014402 [exp]	7.9	0.8713
AT4G24570		DIC2	dicarboxylate carrier 2 (.1)		Lus10035936 [exp]	9.2	0.8519

Compare expression of checked genes

Lus10041159 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.