Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G43540 66 / 5e-14 C2H2ZnF C2H2 and C2HC zinc fingers superfamily protein (.1) AT3G09290 62 / 4e-12 C2H2ZnF TAC1 telomerase activator1 (.1) AT3G53820 57 / 1e-10 C2H2ZnF C2H2 and C2HC zinc fingers superfamily protein (.1) AT2G42410 57 / 4e-10 C2H2ZnF ATZFP11, ZFP11 zinc finger protein 11 (.1) AT3G23130 57 / 4e-10 C2H2ZnF FLO10, FON1, SUP SUPERMAN, FLORAL ORGAN NUMBER 1, FLORAL DEFECTIVE 10, C2H2 and C2HC zinc fingers superfamily protein (.1) AT2G37740 58 / 5e-10 C2H2ZnF ATZFP10, ZFP10 zinc-finger protein 10 (.1) AT3G23140 56 / 5e-10 C2H2ZnF URO UPRIGHT ROSETTE, C2H2 and C2HC zinc fingers superfamily protein (.1) AT5G06070 56 / 2e-09 C2H2ZnF RAB, RBE RABBIT EARS, C2H2 and C2HC zinc fingers superfamily protein (.1) AT4G17810 55 / 2e-09 C2H2ZnF ZFP12 C2H2 and C2HC zinc fingers superfamily protein (.1) AT1G24625 50 / 1e-07 C2H2ZnF ZFP7 zinc finger protein 7 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10021881 [exp] 201 / 1e-65 AT5G43540 67 / 3e-14 C2H2 and C2HC zinc fingers superfamily protein (.1) Lus10021213 [exp] 93 / 1e-23 AT3G09290 73 / 2e-16 telomerase activator1 (.1) Lus10022204 [exp] 75 / 8e-18 AT3G09290 67 / 2e-15 telomerase activator1 (.1) Lus10040767 [exp] 63 / 5e-12 AT3G09290 71 / 5e-15 telomerase activator1 (.1) Lus10033867 [exp] 62 / 6e-12 AT5G43540 65 / 1e-13 C2H2 and C2HC zinc fingers superfamily protein (.1) Lus10014755 [exp] 61 / 7e-12 AT5G43540 63 / 5e-13 C2H2 and C2HC zinc fingers superfamily protein (.1) Lus10024363 [exp] 59 / 1e-10 AT3G53820 69 / 3e-15 C2H2 and C2HC zinc fingers superfamily protein (.1) Lus10010870 [exp] 56 / 1e-09 AT3G09290 65 / 2e-13 telomerase activator1 (.1) Lus10004705 [exp] 56 / 1e-09 AT2G37740 100 / 1e-25 zinc-finger protein 10 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G074400 [exp] 72 / 1e-15 AT5G43540 69 / 3e-15 C2H2 and C2HC zinc fingers superfamily protein (.1) Potri.008G164100 [exp] 70 / 6e-15 AT5G43540 69 / 3e-15 C2H2 and C2HC zinc fingers superfamily protein (.1) Potri.009G037100 [exp] 68 / 3e-14 AT3G53820 74 / 5e-17 C2H2 and C2HC zinc fingers superfamily protein (.1) Potri.016G101300 [exp] 67 / 4e-14 AT3G53820 92 / 2e-24 C2H2 and C2HC zinc fingers superfamily protein (.1) Potri.006G089301 [exp] 64 / 6e-13 AT3G53820 96 / 1e-25 C2H2 and C2HC zinc fingers superfamily protein (.1) Potri.002G041600 [exp] 62 / 4e-12 AT4G17810 65 / 6e-13 C2H2 and C2HC zinc fingers superfamily protein (.1) Potri.005G221500 [exp] 62 / 4e-12 AT5G43540 61 / 6e-12 C2H2 and C2HC zinc fingers superfamily protein (.1) Potri.002G041700 [exp] 61 / 2e-11 AT2G42410 105 / 3e-28 zinc finger protein 11 (.1) Potri.005G221400 [exp] 59 / 1e-10 AT2G42410 97 / 4e-25 zinc finger protein 11 (.1) Potri.008G059000 [exp] 58 / 4e-10 AT5G06070 99 / 2e-24 RABBIT EARS, C2H2 and C2HC zinc fingers superfamily protein (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10041160 pacid=23179905 polypeptide=Lus10041160 locus=Lus10041160.g ID=Lus10041160.BGIv1.0 annot-version=v1.0 ATGGATTCGCCGAACGAGGAGCGAAACGACGACGTGCAGCAGCAGAGGTCGATACCCAGTCCGAGACGGTTTTACGAGTGCAGTTTCTGCAAGAGAGGGT TCACCAACGCACAGGCGCTGGGCGGCCACATGAACATCCACCGCAGAGATCGGGACCCCAACTACTCCTCCAAACCACACCCTCCGCCGCCACCGCCTCC AACAAAAATCCCTTTCTCCAATTCCTCCAGGGAGCGGCCGCCGGTTTGGGTGTCGGAATCCTCCTCCTCCTCCTCCGCCGCCGCAAATGTTTACAGTAGG CCAGCTGCGGGTTTGATTTGGCAGGATTCTAATAATCCACGTCATCATCAACAATACCCGTACGTTTACTTTCAGCAGCAGGTGCAGGGTAGTCATGCGA TGGTCCCGCCCACACCCGAGTCCAGCCAAAATCAAGGGGTGTCGTCGTCCGTGACGGCCGTGAGCGAGCAGCAGGTGATATGGGGGGCTAATTTGAGTCT GCAGGTCGGGCCTGCTGGGTCGGCTGAGCTGGCTAATAATGATCATGATGATGGCGATGACGTGGATTTGGAGCTTCGGCTTGGGCATCACTGA
AA sequence Show only first row Show all	>Lus10041160 pacid=23179905 polypeptide=Lus10041160 locus=Lus10041160.g ID=Lus10041160.BGIv1.0 annot-version=v1.0 MDSPNEERNDDVQQQRSIPSPRRFYECSFCKRGFTNAQALGGHMNIHRRDRDPNYSSKPHPPPPPPPTKIPFSNSSRERPPVWVSESSSSSSAAANVYSR PAAGLIWQDSNNPRHHQQYPYVYFQQQVQGSHAMVPPTPESSQNQGVSSSVTAVSEQQVIWGANLSLQVGPAGSAELANNDHDDGDDVDLELRLGHH

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G43540	C2H2ZnF		C2H2 and C2HC zinc fingers sup...		Lus10041160 [exp]	0	1
AT3G26040			HXXXD-type acyl-transferase fa...		Lus10014695 [exp]	3.3	0.8490
AT3G61220		SDR1	short-chain dehydrogenase/redu...		Lus10014693 [exp]	5.2	0.8048
					Lus10042300 [exp]	11.8	0.8223
AT1G24260	MADS	AGL9, SEP3	SEPALLATA3, AGAMOUS-like 9, K-...		Lus10003124 [exp]	22.2	0.7745
AT5G20240	MADS	PI, PISTILLATA	PISTILLATA, K-box region and M...		Lus10029719 [exp]	27.8	0.7679
AT1G24260	MADS	AGL9, SEP3	SEPALLATA3, AGAMOUS-like 9, K-...		Lus10003125 [exp]	30.5	0.7676
					Lus10038594 [exp]	32.7	0.7666
AT5G37660		PDLP7	plasmodesmata-located protein ...		Lus10015952 [exp]	34.7	0.7666
AT1G14430			glyoxal oxidase-related protei...		Lus10030798 [exp]	34.9	0.7718
AT3G19300			Protein kinase superfamily pro...		Lus10018096 [exp]	36.6	0.7666

Compare expression of checked genes

Lus10041160 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.