Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G14480 283 / 2e-93 Protein kinase superfamily protein (.1) AT5G14720 220 / 3e-67 Protein kinase superfamily protein (.1) AT1G79640 204 / 5e-61 Protein kinase superfamily protein (.1.2) AT4G10730 200 / 2e-59 Protein kinase superfamily protein (.1) AT4G24100 193 / 8e-57 Protein kinase superfamily protein (.1) AT1G23700 160 / 5e-46 Protein kinase superfamily protein (.1) AT1G70430 160 / 2e-45 Protein kinase superfamily protein (.1) AT3G15220 137 / 1e-36 Protein kinase superfamily protein (.1) AT1G53165 131 / 1e-34 ATMAP4KALPHA1 ,ATMAP4K ALPHA1 Protein kinase superfamily protein (.1.2.3) AT1G69220 110 / 5e-27 SIK1 Protein kinase superfamily protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10021882 [exp] 419 / 3e-146 AT4G14480 501 / 6e-175 Protein kinase superfamily protein (.1) Lus10014542 [exp] 204 / 7e-61 AT5G14720 895 / 0.0 Protein kinase superfamily protein (.1) Lus10026108 [exp] 203 / 7e-61 AT1G79640 789 / 0.0 Protein kinase superfamily protein (.1.2) Lus10000416 [exp] 203 / 1e-60 AT1G79640 760 / 0.0 Protein kinase superfamily protein (.1.2) Lus10033230 [exp] 198 / 2e-58 AT4G24100 895 / 0.0 Protein kinase superfamily protein (.1) Lus10000878 [exp] 196 / 1e-57 AT4G24100 887 / 0.0 Protein kinase superfamily protein (.1) Lus10001677 [exp] 194 / 2e-56 AT4G10730 892 / 0.0 Protein kinase superfamily protein (.1) Lus10032144 [exp] 189 / 9e-56 AT5G14720 838 / 0.0 Protein kinase superfamily protein (.1) Lus10017326 [exp] 189 / 8e-55 AT4G10730 883 / 0.0 Protein kinase superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G163800 [exp] 306 / 1e-101 AT4G14480 504 / 1e-175 Protein kinase superfamily protein (.1) Potri.016G049500 [exp] 238 / 5e-75 AT4G14480 368 / 2e-122 Protein kinase superfamily protein (.1) Potri.004G194700 [exp] 229 / 1e-72 AT4G14480 356 / 1e-118 Protein kinase superfamily protein (.1) Potri.001G349300 [exp] 213 / 1e-64 AT5G14720 963 / 0.0 Protein kinase superfamily protein (.1) Potri.001G037900 [exp] 208 / 8e-63 AT1G79640 858 / 0.0 Protein kinase superfamily protein (.1.2) Potri.003G186700 [exp] 203 / 1e-60 AT1G79640 862 / 0.0 Protein kinase superfamily protein (.1.2) Potri.001G084700 [exp] 197 / 3e-58 AT4G10730 905 / 0.0 Protein kinase superfamily protein (.1) Potri.003G146000 [exp] 195 / 2e-57 AT4G10730 902 / 0.0 Protein kinase superfamily protein (.1) Potri.001G397600 [exp] 138 / 5e-37 AT3G15220 828 / 0.0 Protein kinase superfamily protein (.1) Potri.011G116300 [exp] 135 / 8e-36 AT3G15220 817 / 0.0 Protein kinase superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [flax] [poplar] PKinase PF00069 [flax] [poplar] Pkinase Protein kinase domain
Representative CDS sequence Show only first row Show all	>Lus10041162 pacid=23179838 polypeptide=Lus10041162 locus=Lus10041162.g ID=Lus10041162.BGIv1.0 annot-version=v1.0 ATGTCGGCCGGTTCCTTGCAGTCCATAATCTCTACTTCTTTCCCTCAAGGATTTTCGGAGGCTTGCATTGCAGTGGTGCTCAAGGAAACCCTCCACACTC TCTTTTACCTCCACAACCAGGGTCACTTGCACAGAGATATCAAGGCTGGGAACATTCTGATGGATTCTGATGGACACGTCAAGCTCGCCGACTTTGGTGT TTCAGCATCGCTTTTTGAGCCGAATAATGGCGGCGGCGGCGGGTGTGAGGACGGCCGGCAGCAGCAGATGAAGCTCACTGACATGGCCGGGACGCCCTAC TGGATGGCGCCTGAGGTAATCCACTCGCACACAGGGTACAGCTTGAAAGCAGACATATGGTCGTTCGGAATCACCGCTCTAGAATTAGCCTACGGATGCC CTCCTCTCTCACACTTGTCTCCTTCCAAGTCCCTGCTCATGAAGATCACCAAGAGGTTCCGTTTCTCCGACTACGAGGACAAGGCCGCCGTCAACGGAAA GAAGTTGTCCAAATCATTCAAGGAAATGCTTGGAGCCTGTCTGAATCAAGACCCATCCAAACGCCCGTCCGCGGATAAACTCCTGAAACACTGCTCCTTC TTCAAGAACTGCACCAAAGGGTCCGATTTCCTCGTCAAGAACATACTCAACGGCCTGCCCAGCGTTGAAGACCGGTACAAATTAGCAAGCTGCAGCAGCA CTGATCATAATAATAATGTTGTGCAGCAGAATGTGAGAAGGATCAGCGGGTGGAATTTCAATTTGTACTCTTTTTCCCCACTGAAAATTTAA
AA sequence Show only first row Show all	>Lus10041162 pacid=23179838 polypeptide=Lus10041162 locus=Lus10041162.g ID=Lus10041162.BGIv1.0 annot-version=v1.0 MSAGSLQSIISTSFPQGFSEACIAVVLKETLHTLFYLHNQGHLHRDIKAGNILMDSDGHVKLADFGVSASLFEPNNGGGGGCEDGRQQQMKLTDMAGTPY WMAPEVIHSHTGYSLKADIWSFGITALELAYGCPPLSHLSPSKSLLMKITKRFRFSDYEDKAAVNGKKLSKSFKEMLGACLNQDPSKRPSADKLLKHCSF FKNCTKGSDFLVKNILNGLPSVEDRYKLASCSSTDHNNNVVQQNVRRISGWNFNLYSFSPLKI

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G14480			Protein kinase superfamily pro...		Lus10041162 [exp]	0	1
					Lus10004280 [exp]	1.0	0.9946
AT3G07310			Protein of unknown function (D...		Lus10002342 [exp]	2.0	0.9918
					Lus10019232 [exp]	2.4	0.9912
AT3G51680		AtSDR2	short-chain dehydrogenase/redu...		Lus10022756 [exp]	3.5	0.9821
AT2G43590			Chitinase family protein (.1)		Lus10003587 [exp]	6.3	0.9784
AT1G67070		PMI2, DIN9	PHOSPHOMANNOSE ISOMERASE 2, DA...		Lus10015062 [exp]	8.1	0.9789
AT1G14550			Peroxidase superfamily protein...		Lus10024207 [exp]	9.0	0.9582
AT1G14590			Nucleotide-diphospho-sugar tra...		Lus10017981 [exp]	10.0	0.9808
AT1G79460		ATKS1, ATKS, GA...	GA REQUIRING 2, ARABIDOPSIS TH...		Lus10014673 [exp]	11.4	0.9741
AT3G46510		ATPUB13	ARABIDOPSIS THALIANA PLANT U-B...		Lus10007511 [exp]	11.5	0.9788

Compare expression of checked genes

Lus10041162 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.