Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	No hit found
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Poplar homologues Show only best Show top 10	No hit found
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10041164 pacid=23179584 polypeptide=Lus10041164 locus=Lus10041164.g ID=Lus10041164.BGIv1.0 annot-version=v1.0 ATGGCCGCGGCTTTTAGAAACCGTGTCCCCACTCTGGCTATATGTTTGCAATTGGTTATAACTGGAGTGCTAGTCTTGCAGCTGATAAGCTGCTTTGATG TTGTTGGAGCAGCGCGGCCATTACATAATCAGGAGATATGGCGGCGAGAGGAAAATAATAATCTGGTAGGGATGCAGTCACTCCAGAGAGGTACAGTTCC TCCGTCTACATCTTCTCCTTGCGGCCATACTCCTGGCGGAACGGGACACTGCACATTGACCGAGATGAATTATGCCGCCGGTGGTCGTAATTCCCAACTC CGCCGCCACTCTCCACCGCCGCCGGCCGGTGATTTCTCGTCGTGA
AA sequence Show only first row Show all	>Lus10041164 pacid=23179584 polypeptide=Lus10041164 locus=Lus10041164.g ID=Lus10041164.BGIv1.0 annot-version=v1.0 MAAAFRNRVPTLAICLQLVITGVLVLQLISCFDVVGAARPLHNQEIWRREENNNLVGMQSLQRGTVPPSTSSPCGHTPGGTGHCTLTEMNYAAGGRNSQL RRHSPPPPAGDFSS

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
					Lus10041164 [exp]	0	1
AT5G39160			RmlC-like cupins superfamily p...		Lus10021980 [exp]	1.4	0.9927
AT3G23230	AP2_ERF	ERF98	Integrase-type DNA-binding sup...		Lus10011830 [exp]	2.0	0.9854
AT5G09360		LAC14	laccase 14 (.1)		Lus10041067 [exp]	2.2	0.9815
AT1G78410			VQ motif-containing protein (....		Lus10023308 [exp]	2.6	0.9781
AT2G47140		AtSDR5	short-chain dehydrogenase redu...		Lus10016991 [exp]	6.2	0.9821
AT3G45140		ATLOX2, LOX2	ARABIODOPSIS THALIANA LIPOXYGE...		Lus10031810 [exp]	6.3	0.9539
AT5G67550			unknown protein		Lus10025583 [exp]	6.6	0.9820
AT3G51680		AtSDR2	short-chain dehydrogenase/redu...		Lus10021312 [exp]	6.9	0.9803
AT1G20870			HSP20-like chaperones superfam...		Lus10018368 [exp]	7.5	0.9613
AT3G61680			alpha/beta-Hydrolases superfam...		Lus10009811 [exp]	10.8	0.9496

Compare expression of checked genes

Lus10041164 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.