Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G44810 464 / 3e-164 DAD1 DEFECTIVE ANTHER DEHISCENCE 1, alpha/beta-Hydrolases superfamily protein (.1) AT4G16820 321 / 2e-105 PLA-I{beta]2 phospholipase A I beta 2, alpha/beta-Hydrolases superfamily protein (.1) AT2G30550 248 / 6e-78 alpha/beta-Hydrolases superfamily protein (.1.2) AT1G06800 245 / 5e-77 PLA-I{gamma}1 phospholipase A I gamma 1, alpha/beta-Hydrolases superfamily protein (.1.2) AT1G51440 238 / 2e-73 alpha/beta-Hydrolases superfamily protein (.1) AT1G30370 233 / 3e-71 DLAH DAD1-like acylhydrolase, alpha/beta-Hydrolases superfamily protein (.1) AT1G05800 230 / 6e-71 DGL DONGLE, alpha/beta-Hydrolases superfamily protein (.1) AT2G31690 221 / 2e-67 alpha/beta-Hydrolases superfamily protein (.1) AT1G06250 182 / 4e-53 alpha/beta-Hydrolases superfamily protein (.1) AT4G18550 172 / 3e-49 AtDSEL Arabidopsis thaliana DAD1-like seeding establishment-related lipase, alpha/beta-Hydrolases superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10042914 [exp] 411 / 7e-142 AT2G44810 464 / 1e-163 DEFECTIVE ANTHER DEHISCENCE 1, alpha/beta-Hydrolases superfamily protein (.1) Lus10004364 [exp] 321 / 2e-105 AT4G16820 587 / 0.0 phospholipase A I beta 2, alpha/beta-Hydrolases superfamily protein (.1) Lus10010997 [exp] 320 / 1e-104 AT4G16820 551 / 0.0 phospholipase A I beta 2, alpha/beta-Hydrolases superfamily protein (.1) Lus10040158 [exp] 313 / 1e-102 AT4G16820 573 / 0.0 phospholipase A I beta 2, alpha/beta-Hydrolases superfamily protein (.1) Lus10038524 [exp] 228 / 2e-70 AT1G30370 526 / 0.0 DAD1-like acylhydrolase, alpha/beta-Hydrolases superfamily protein (.1) Lus10015521 [exp] 224 / 7e-69 AT1G30370 524 / 0.0 DAD1-like acylhydrolase, alpha/beta-Hydrolases superfamily protein (.1) Lus10038526 [exp] 221 / 8e-67 AT1G30370 539 / 0.0 DAD1-like acylhydrolase, alpha/beta-Hydrolases superfamily protein (.1) Lus10025519 [exp] 213 / 4e-64 AT2G31690 468 / 3e-162 alpha/beta-Hydrolases superfamily protein (.1) Lus10023280 [exp] 205 / 2e-60 AT1G30370 537 / 0.0 DAD1-like acylhydrolase, alpha/beta-Hydrolases superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G047900 [exp] 452 / 5e-158 AT2G44810 557 / 0.0 DEFECTIVE ANTHER DEHISCENCE 1, alpha/beta-Hydrolases superfamily protein (.1) Potri.002G137900 [exp] 442 / 4e-154 AT2G44810 543 / 0.0 DEFECTIVE ANTHER DEHISCENCE 1, alpha/beta-Hydrolases superfamily protein (.1) Potri.014G047700 [exp] 439 / 7e-153 AT2G44810 491 / 9e-174 DEFECTIVE ANTHER DEHISCENCE 1, alpha/beta-Hydrolases superfamily protein (.1) Potri.003G081500 [exp] 323 / 2e-106 AT4G16820 558 / 0.0 phospholipase A I beta 2, alpha/beta-Hydrolases superfamily protein (.1) Potri.001G153100 [exp] 318 / 2e-104 AT4G16820 575 / 0.0 phospholipase A I beta 2, alpha/beta-Hydrolases superfamily protein (.1) Potri.001G263200 [exp] 253 / 3e-79 AT1G30370 607 / 0.0 DAD1-like acylhydrolase, alpha/beta-Hydrolases superfamily protein (.1) Potri.009G051900 [exp] 251 / 2e-78 AT1G51440 700 / 0.0 alpha/beta-Hydrolases superfamily protein (.1) Potri.002G044700 [exp] 245 / 4e-76 AT1G06800 662 / 0.0 phospholipase A I gamma 1, alpha/beta-Hydrolases superfamily protein (.1.2) Potri.002G231600 [exp] 244 / 4e-76 AT1G05800 524 / 0.0 DONGLE, alpha/beta-Hydrolases superfamily protein (.1) Potri.014G150700 [exp] 243 / 5e-76 AT2G31690 491 / 7e-172 alpha/beta-Hydrolases superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0028 [flax] [poplar] AB_hydrolase PF01764 [flax] [poplar] Lipase_3 Lipase (class 3)
Representative CDS sequence Show only first row Show all	>Lus10041165 pacid=23180004 polypeptide=Lus10041165 locus=Lus10041165.g ID=Lus10041165.BGIv1.0 annot-version=v1.0 ATGACTTCGTATAATACACACCCCCACCACCACCACCACCATCGCGTCTTTTCATCCCACTCCTGCTCTCAGTCTCACCATCTCCTCACTAAACCCGGTA TTAAGTCCACGTCATTGACCTTCAATCCCACCCAACCCAAGGACCAGATCAAGAACATTAAGCTTGCAAACCGCTGGAAGGAGTACCAAGGAATCCGCAA CTGGGATGGCTTACTCGACCCGCTAGACGACAACTTACGCAACGAAATCCTCCGCTACGGCCACTTCGTCGACGCCGCGTACAAGTCATTCGACTTCGAC ACCGCCACGTGTCGCTTCCCCAAGTCCACATTGCTAGACCGTGCCGGATTCCCGGACACCGGTTACCGCGTCACTCGGAACCTCCGCGCCACGTCAGGGA TCCAGCTGCCAAACTGGCTGGAAAAGGCTCCTACCTGGATGTCCGTCCGGTCTAGCTGGATTGGGTACGTGGCCGTCTGTCAGGACAAGGACGAGATCTC TCGCCTCGGTAGAAGGGACATCGTTATTGCCTTCCGCGGGACCGCCACGTGTCTCGAGTGGGTAGAAAACCTCCGGGCCAATCTCAGCCCGATAGAGGAA AAGGGTACTGGGCCGATGGTCCAGAGCGGATTCTTGAGCCTGTACAAATCTGGGCTGGAAACCGACGGGCCGAGCCTACAAGACACGATCCGTGGGGAGA TCCACAGATTGCTGAAGGTGTACAGCGGGGAGCCGCTGAGTCTGACCATCACGGGGCACAGCTTGGGGGCTGCATTGGCTACGCTGGCGGCGTACGATAT AAAGATGGAGTTCAAGCGGGCTGCACCTACGATGATCACGGTGATATCGTTTGGGGGGCCGCGCATGGGGAACAACAGGTTCAAGCAGCAACTGGATAAG CAGGGAACGAAAGTGCTTAGGATCGTTAACTCTGACGACGTTATAACCAAAGTGCCGCCGGGGTTGGTAAGTGATCATCGTCAGTTGACGGGAGGGTGGA TGGCGATGATGATGAGGAGGTGGGTTTACTCGGAGGTGGGGAAAGAGTTGAGGCTAAGCAGCAGCAAATGTTCTCCTTACCTTAACGGAATCAACGTTGC GACGTGTCACGACCTGAGAACGTATCTGCACCTGGTGAATGGATACGTCAGCTCGTCCTGTCCTTTTCGATCTACCACAACTAGTAGGTTAAATAAACTA GTTTAG
AA sequence Show only first row Show all	>Lus10041165 pacid=23180004 polypeptide=Lus10041165 locus=Lus10041165.g ID=Lus10041165.BGIv1.0 annot-version=v1.0 MTSYNTHPHHHHHHRVFSSHSCSQSHHLLTKPGIKSTSLTFNPTQPKDQIKNIKLANRWKEYQGIRNWDGLLDPLDDNLRNEILRYGHFVDAAYKSFDFD TATCRFPKSTLLDRAGFPDTGYRVTRNLRATSGIQLPNWLEKAPTWMSVRSSWIGYVAVCQDKDEISRLGRRDIVIAFRGTATCLEWVENLRANLSPIEE KGTGPMVQSGFLSLYKSGLETDGPSLQDTIRGEIHRLLKVYSGEPLSLTITGHSLGAALATLAAYDIKMEFKRAAPTMITVISFGGPRMGNNRFKQQLDK QGTKVLRIVNSDDVITKVPPGLVSDHRQLTGGWMAMMMRRWVYSEVGKELRLSSSKCSPYLNGINVATCHDLRTYLHLVNGYVSSSCPFRSTTTSRLNKL V

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G44810		DAD1	DEFECTIVE ANTHER DEHISCENCE 1,...		Lus10041165 [exp]	0	1
AT2G27240			Aluminium activated malate tra...		Lus10001846 [exp]	3.2	0.8938
AT4G18930			RNA ligase/cyclic nucleotide p...		Lus10002767 [exp]	3.7	0.9306
AT1G17010			2-oxoglutarate (2OG) and Fe(II...		Lus10030941 [exp]	5.3	0.8593
AT2G29940		ABCG31, PDR3, A...	ATP-binding cassette G31, plei...		Lus10020550 [exp]	6.0	0.8879
AT4G18930			RNA ligase/cyclic nucleotide p...		Lus10002766 [exp]	12.8	0.8592
AT2G43610			Chitinase family protein (.1)		Lus10025948 [exp]	13.0	0.8767
AT2G03430			Ankyrin repeat family protein ...		Lus10036968 [exp]	19.7	0.7943
AT4G00910			Aluminium activated malate tra...		Lus10001528 [exp]	20.4	0.8642
AT4G36220		CYP84A1, FAH1, ...	ferulic acid 5-hydroxylase 1 (...		Lus10025975 [exp]	23.2	0.8226
AT4G38070	bHLH		basic helix-loop-helix (bHLH) ...		Lus10012737 [exp]	31.3	0.8721

Compare expression of checked genes

Lus10041165 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.