Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G14500 539 / 0 Polyketide cyclase/dehydrase and lipid transport superfamily protein (.1.2) AT3G23080 503 / 8e-178 Polyketide cyclase/dehydrase and lipid transport superfamily protein (.1.2) AT1G64720 323 / 1e-107 CP5 Polyketide cyclase/dehydrase and lipid transport superfamily protein (.1) AT5G54170 316 / 9e-104 Polyketide cyclase/dehydrase and lipid transport superfamily protein (.1) AT3G13062 137 / 3e-36 Polyketide cyclase/dehydrase and lipid transport superfamily protein (.1.2.3) AT1G55960 125 / 7e-32 Polyketide cyclase/dehydrase and lipid transport superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10021883 [exp] 743 / 0 AT4G14500 605 / 0.0 Polyketide cyclase/dehydrase and lipid transport superfamily protein (.1.2) Lus10033247 [exp] 318 / 4e-105 AT1G64720 523 / 0.0 Polyketide cyclase/dehydrase and lipid transport superfamily protein (.1) Lus10032938 [exp] 316 / 9e-104 AT1G64720 437 / 2e-152 Polyketide cyclase/dehydrase and lipid transport superfamily protein (.1) Lus10008281 [exp] 249 / 3e-80 AT1G64720 374 / 1e-130 Polyketide cyclase/dehydrase and lipid transport superfamily protein (.1) Lus10033334 [exp] 115 / 2e-28 AT1G55960 384 / 5e-132 Polyketide cyclase/dehydrase and lipid transport superfamily protein (.1) Lus10034791 [exp] 95 / 7e-21 AT3G13062 346 / 2e-115 Polyketide cyclase/dehydrase and lipid transport superfamily protein (.1.2.3) Lus10000083 [exp] 62 / 8e-11 AT3G23080 122 / 6e-33 Polyketide cyclase/dehydrase and lipid transport superfamily protein (.1.2) Lus10015566 [exp] 46 / 1e-05 AT1G64720 105 / 5e-27 Polyketide cyclase/dehydrase and lipid transport superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G162600 [exp] 573 / 0 AT4G14500 581 / 0.0 Polyketide cyclase/dehydrase and lipid transport superfamily protein (.1.2) Potri.010G076500 [exp] 566 / 0 AT4G14500 571 / 0.0 Polyketide cyclase/dehydrase and lipid transport superfamily protein (.1.2) Potri.011G151500 [exp] 350 / 2e-117 AT1G64720 515 / 0.0 Polyketide cyclase/dehydrase and lipid transport superfamily protein (.1) Potri.015G005000 [exp] 347 / 4e-116 AT1G64720 474 / 1e-166 Polyketide cyclase/dehydrase and lipid transport superfamily protein (.1) Potri.012G021400 [exp] 338 / 1e-112 AT1G64720 478 / 2e-168 Polyketide cyclase/dehydrase and lipid transport superfamily protein (.1) Potri.001G450100 [exp] 335 / 2e-111 AT1G64720 489 / 6e-173 Polyketide cyclase/dehydrase and lipid transport superfamily protein (.1) Potri.007G002700 [exp] 126 / 4e-32 AT3G13062 390 / 5e-134 Polyketide cyclase/dehydrase and lipid transport superfamily protein (.1.2.3) Potri.014G001100 [exp] 124 / 2e-31 AT3G13062 416 / 3e-144 Polyketide cyclase/dehydrase and lipid transport superfamily protein (.1.2.3)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10041166 pacid=23179963 polypeptide=Lus10041166 locus=Lus10041166.g ID=Lus10041166.BGIv1.0 annot-version=v1.0 ATGGACGCGGCTTTCTTCTTCGATCTGATGGATTTCTTCAAGGAACCCTCCATCACTGAAACATTCGTCGATATTTTACTCTGCGCCGTCCCCATATGGC TGGCGGTGATGATCGGTCTCGTCATCGGTTGGTCATGGCGGCCTAGGTGGACCGGATTGGTCTTCCTAGGGTTGCGTAGCAAGTTCAGGTATCTATGGAC GGTGCCGCCGGGTTTTGGAGCGCGTCGACTCTGGCTAGCTTTCACGGCTCTGTCGGCTTTCTCCGTCTGCCGCACGATCTGGTCCGATTTTAGAGGGAAA AGGGAAAAATCAGCTGCTGCTGCTGTGGCGGCTGCTTCGTCTCTTTCTCCAGATTCAGCGGCTACAAGCTGCGAGGGATTTTCTCATTCTGCTAGCTCCG CATGTGAAGAGAGGGAGGAGCTTGTAACAGAGAATGACTTGGAACACCTACTTTTTTTGCTTGAAGGGAAGGATAGTAAAATGGACTGGCAATGTATTAT GGAAAAGACTCCGCCCAACATGTCATATCAAGCTTGGCGCTATGAACCTCAGACAGGCCCTACTGTACTACGTAGCCGAACTGTGTTTGAGGATGCGACT CCCGACTTGGTTAAAGATTTCTTCTGGGATGATGAATTCCGGCCTAAATGGGATCCAATGCTTGGATACATCAAGATACTGGATGAATGTCCTTCTACAG GAATCAGCATTTCTCATTGGATAAAAAAGTTTCCATTTTTCTGTAGTGATAGAGAATACATCATTGGAAGAAGAATATGGGAGGCTGGGAAGTCATACTA TTGCGTTACCAAGGGGGTGCCATACCCGGGCTTGCAGAAGCGAGACAAGCCAAGACGTGTGGAGCTTTATTTCTCTGGTTGGGTGATTAGGCCTGTTGAA TCGCGGAAAGGTGATGGGCAAATGTCAGCGTGTGAAGTAATTCTGGTGCATTATGAAGACATGGGTATCCCCAAAGACGTGGCAAAGATAGGAGTCCGTC ATGGGATGTGGCCAGCCGTGAAGAAACTGCATTCTGGGATGCGATCATACCAGAATGCCAGGAAAGCAGATGCCCCGTTGTCCCGTTGTGCTATAATGGC CAAGATCACCACAAAAGTAACTCTGGACAAGAACTCTGAATCAGAGGATTCTACGGACGAAGGGGGAATCAAAATCGGATTGGTGGAAGGGAATGAAAGG CGGAAAGAACATGGAATCGATTGGAAATGGATAGTGTTAGGTGGAGCAGTAGCTGTGGTGTGCGGAGTTCGTTCAGGGGCAATCGCGAAGGCCTTGTTAC TTGGTGCAGGGCAGAGAATTGCCCGGAGGTGA
AA sequence Show only first row Show all	>Lus10041166 pacid=23179963 polypeptide=Lus10041166 locus=Lus10041166.g ID=Lus10041166.BGIv1.0 annot-version=v1.0 MDAAFFFDLMDFFKEPSITETFVDILLCAVPIWLAVMIGLVIGWSWRPRWTGLVFLGLRSKFRYLWTVPPGFGARRLWLAFTALSAFSVCRTIWSDFRGK REKSAAAAVAAASSLSPDSAATSCEGFSHSASSACEEREELVTENDLEHLLFLLEGKDSKMDWQCIMEKTPPNMSYQAWRYEPQTGPTVLRSRTVFEDAT PDLVKDFFWDDEFRPKWDPMLGYIKILDECPSTGISISHWIKKFPFFCSDREYIIGRRIWEAGKSYYCVTKGVPYPGLQKRDKPRRVELYFSGWVIRPVE SRKGDGQMSACEVILVHYEDMGIPKDVAKIGVRHGMWPAVKKLHSGMRSYQNARKADAPLSRCAIMAKITTKVTLDKNSESEDSTDEGGIKIGLVEGNER RKEHGIDWKWIVLGGAVAVVCGVRSGAIAKALLLGAGQRIARR

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G14500			Polyketide cyclase/dehydrase a...		Lus10041166 [exp]	0	1
AT4G14500			Polyketide cyclase/dehydrase a...		Lus10021883 [exp]	1.0	0.9136
AT1G15140			FAD/NAD(P)-binding oxidoreduct...		Lus10007955 [exp]	2.8	0.8052
AT5G47870		RAD52-2B, RAD52...	radiation sensitive 51-2, unkn...		Lus10001196 [exp]	14.4	0.7335
AT4G14600			Target SNARE coiled-coil domai...		Lus10041130 [exp]	17.2	0.7232
AT4G31560		HCF153	high chlorophyll fluorescence ...		Lus10039571 [exp]	24.3	0.7767
AT3G04790		EMB3119	EMBRYO DEFECTIVE 3119, Ribose ...		Lus10009181 [exp]	28.8	0.7710
AT4G09620			Mitochondrial transcription te...		Lus10009420 [exp]	30.3	0.7405
AT5G48545		HINT3	histidine triad nucleotide-bin...		Lus10025883 [exp]	31.2	0.7184
AT1G56300			Chaperone DnaJ-domain superfam...		Lus10020685 [exp]	33.0	0.6653
AT4G26860			Predicted pyridoxal phosphate-...		Lus10032558 [exp]	38.0	0.7655

Compare expression of checked genes

Lus10041166 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.