Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G30630 504 / 2e-175 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2) AT1G06750 502 / 8e-175 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2) AT1G04280 486 / 3e-168 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10021885 [exp] 812 / 0 AT2G30630 442 / 7e-152 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2) Lus10033855 [exp] 506 / 3e-176 AT2G30630 804 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2) Lus10014744 [exp] 493 / 9e-171 AT2G30630 793 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2) Lus10021884 [exp] 480 / 3e-169 AT2G30630 224 / 2e-69 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2) Lus10021226 [exp] 473 / 2e-165 AT1G04280 445 / 2e-154 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Lus10022217 [exp] 458 / 3e-160 AT1G04280 416 / 2e-143 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Lus10021225 [exp] 77 / 1e-15 AT1G06750 66 / 3e-12 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G162000 [exp] 562 / 0 AT1G04280 549 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Potri.005G220000 [exp] 546 / 0 AT1G06750 803 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2) Potri.002G043000 [exp] 540 / 0 AT1G06750 777 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2) Potri.008G162400 [exp] 508 / 2e-177 AT1G04280 491 / 4e-170 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0023 [flax] [poplar] P-loop_NTPase PF06414 [flax] [poplar] Zeta_toxin Zeta toxin
Representative CDS sequence Show only first row Show all	>Lus10041167 pacid=23179711 polypeptide=Lus10041167 locus=Lus10041167.g ID=Lus10041167.BGIv1.0 annot-version=v1.0 ATGGCTACCTCGTCTTTTGTTCTAGTCGCTGCCGCCGCCGAATACTACCGGCGGAGTTCCAATAACAGCAGCACAGGACTCATCCCGAGGGCAGACGAAG CAATAGGCGGCAGGCGGAAAGTGGAGAGATTCTCTCACTATGTGGCGAGGCAACTGGGGTTCTCGGATCCCAGTGAGTGCCCGCAGCTCTGCAAGCTAGC CTACGAATACCTAACCAGCAAATCCGCCGCTGGATGCGAAGACAACATCTATGATCACTTCGCTGGATGCGAAGGCGAGTCCAGCGGTCGGGCCAAACAG CTTTGCGGAATGCTCGTGCTGGAGCTGGAGAGGTGTATTTTGAGTTACTTCGCTTTCCACTGGGATCACGCCTCTTCTATCGTCACTCAGGTGATGAATG GGCCATTGGAGAAGAAGCGGAAGTTCAAAAACGTTGTTCTGGCTGCCACCAGGGAGCAAAGATTTGAGAGGGTGAGTAAGAGCCTGAAGATGACGAGGGT GTTTTCCAACCTAGTAGAGGAAATGAAAGCCATCCGGAGAAGAGAGTCTCACGTCACCGACGACGTCATGGCGCCGGCGCCAGCAGTCAGTGATAGGAGA CCCGTGCTTCTGTTCATGGGCGGCGGCATGGGTGCAGGCAAGAGCACTGTCATCAATGACATCCTCAAAGAATCGTTTTGGCGAGGGGCAGCCGCAAACG CCGTCGTAGTGGAGGCAGATGCATTCAAAGAATCCGATGTTATTTACAAAGCTCTAAACGCCACCGGCCACCACGACGACATGCTTCGAACGTCTGAATT GGTTCACCAAGCGTCAATTGATGCGGCGTCGTCGCTGCTAGTGACGGCCCTTAACGAAGGGCGAGACGTGATAATGGACGGTACGCTTTCATGGGAGCCA TTCGTGGAGCAGACAATCCAGATGGCACGCGACGTTCACAACCGCCGTTACCGTATGGGGGTCGGGTACAAGGTTGACGCAGACGGCACCAAAGAAACAG AGAAGTACTGGGAACCAGTAAACGACGATGATGACGACAAATTATTTCACTTGCCTACTACTACTAACAGGAAACCGTACAGAATCGAGATGGTCGGAGT AGTTTGCGACGCATATCTAGCGGTGGTCAGAGGAATCAGGAGAGCTATAGTGACGGGAAGAGCAGTGAGGGTGAATTCGCAGCTAATCTCACATAAGAGA TTCGCAAATGCGTTTCCCAACTACTGTCAGCTAGTGGATAACGCAAGGCTTTACAGCACAAACAGTTTGAATGGCCCGCCAAAGCTGATAGCGACGAAGG ATGGAGACAACAAGATGTGGATTGACCAAGAGGATTTCAAATGGTTGAGTAATGTGGGTAGGTTGAACCCGAGTGCAAAATCGGTGCATGAGTTGTACAG TGATCCAGATCTCATTGATGAACCCGGTTCGGTCTGGAAAGAAGTGGTCTTTAACCCTTCGAGATCCAGCATACAGGCAGAGCTAAGAACGACTATCAAG CGGATTGAAACTTAA
AA sequence Show only first row Show all	>Lus10041167 pacid=23179711 polypeptide=Lus10041167 locus=Lus10041167.g ID=Lus10041167.BGIv1.0 annot-version=v1.0 MATSSFVLVAAAAEYYRRSSNNSSTGLIPRADEAIGGRRKVERFSHYVARQLGFSDPSECPQLCKLAYEYLTSKSAAGCEDNIYDHFAGCEGESSGRAKQ LCGMLVLELERCILSYFAFHWDHASSIVTQVMNGPLEKKRKFKNVVLAATREQRFERVSKSLKMTRVFSNLVEEMKAIRRRESHVTDDVMAPAPAVSDRR PVLLFMGGGMGAGKSTVINDILKESFWRGAAANAVVVEADAFKESDVIYKALNATGHHDDMLRTSELVHQASIDAASSLLVTALNEGRDVIMDGTLSWEP FVEQTIQMARDVHNRRYRMGVGYKVDADGTKETEKYWEPVNDDDDDKLFHLPTTTNRKPYRIEMVGVVCDAYLAVVRGIRRAIVTGRAVRVNSQLISHKR FANAFPNYCQLVDNARLYSTNSLNGPPKLIATKDGDNKMWIDQEDFKWLSNVGRLNPSAKSVHELYSDPDLIDEPGSVWKEVVFNPSRSSIQAELRTTIK RIET

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G30630			P-loop containing nucleoside t...		Lus10041167 [exp]	0	1
AT2G30630			P-loop containing nucleoside t...		Lus10021885 [exp]	2.0	0.8928
AT5G35735			Auxin-responsive family protei...		Lus10012350 [exp]	3.9	0.8845
AT5G61210		SNP33, ATSNAP33...	soluble N-ethylmaleimide-sensi...		Lus10003466 [exp]	4.1	0.8930
AT5G53250		AGP22, ATAGP22	arabinogalactan protein 22 (.1...		Lus10037436 [exp]	7.4	0.8788
AT2G46080			unknown protein		Lus10018821 [exp]	7.7	0.8423
AT4G33780			unknown protein		Lus10035665 [exp]	9.2	0.8597
AT4G17230	GRAS	SCL13	SCARECROW-like 13 (.1)		Lus10017554 [exp]	13.6	0.8811
AT5G24590	NAC	TIP, ANAC091	Arabidopsis NAC domain contain...		Lus10032919 [exp]	17.0	0.8700
AT2G26530		AR781	Protein of unknown function (D...		Lus10006479 [exp]	19.0	0.8287
AT1G25550	GARP		myb-like transcription factor ...		Lus10041485 [exp]	19.0	0.7763

Compare expression of checked genes

Lus10041167 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.