Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G09510 258 / 6e-88 Ribosomal protein S19 family protein (.1.2) AT5G09500 256 / 2e-87 Ribosomal protein S19 family protein (.1) AT1G04270 256 / 3e-87 RPS15 cytosolic ribosomal protein S15 (.1.2) AT5G09490 249 / 1e-84 Ribosomal protein S19 family protein (.1) AT5G43640 231 / 2e-77 Ribosomal protein S19 family protein (.1) AT5G63070 185 / 3e-59 Ribosomal protein S19 family protein (.1) AT1G33850 77 / 3e-18 Ribosomal protein S19 family protein (.1) AT1G04260 61 / 3e-11 PRA1.D, MPIP7, MPI7 PRENYLATED RAB ACCEPTOR 1.D, CAMV movement protein interacting protein 7 (.1) ATCG00820 44 / 4e-06 ATCG00820.1, RPS19 ribosomal protein S19 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10021886 [exp] 384 / 7e-135 AT5G09500 244 / 1e-81 Ribosomal protein S19 family protein (.1) Lus10033856 [exp] 298 / 8e-104 AT5G09510 265 / 9e-93 Ribosomal protein S19 family protein (.1.2) Lus10018777 [exp] 296 / 8e-103 AT5G09510 266 / 3e-93 Ribosomal protein S19 family protein (.1.2) Lus10007469 [exp] 258 / 8e-88 AT5G09500 250 / 6e-87 Ribosomal protein S19 family protein (.1) Lus10026127 [exp] 238 / 5e-80 AT5G09500 244 / 4e-84 Ribosomal protein S19 family protein (.1) Lus10024865 [exp] 233 / 2e-78 AT5G09500 222 / 4e-76 Ribosomal protein S19 family protein (.1) Lus10008692 [exp] 156 / 2e-48 AT5G09490 162 / 2e-52 Ribosomal protein S19 family protein (.1) Lus10027711 [exp] 43 / 3e-05 AT5G47320 123 / 3e-36 ribosomal protein S19 (.1) Lus10003009 [exp] 42 / 0.0003 AT5G47040 1420 / 0.0 lon protease 2 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G076900 [exp] 283 / 9e-98 AT5G09510 267 / 2e-93 Ribosomal protein S19 family protein (.1.2) Potri.002G043200 [exp] 283 / 1e-97 AT5G09500 266 / 5e-93 Ribosomal protein S19 family protein (.1) Potri.005G219700 [exp] 267 / 1e-91 AT5G09500 266 / 6e-93 Ribosomal protein S19 family protein (.1) Potri.008G161901 [exp] 120 / 3e-35 AT5G09510 130 / 4e-41 Ribosomal protein S19 family protein (.1.2) Potri.005G055401 [exp] 86 / 1e-21 AT1G04270 97 / 3e-27 cytosolic ribosomal protein S15 (.1.2) Potri.005G055534 [exp] 76 / 5e-17 AT1G04270 77 / 1e-18 cytosolic ribosomal protein S15 (.1.2) Potri.003G123750 [exp] 68 / 6e-15 AT1G04270 67 / 4e-16 cytosolic ribosomal protein S15 (.1.2) Potri.004G074201 [exp] 56 / 5e-10 AT5G09500 52 / 1e-09 Ribosomal protein S19 family protein (.1) Potri.010G077700 [exp] 57 / 9e-10 AT1G04260 122 / 2e-35 PRENYLATED RAB ACCEPTOR 1.D, CAMV movement protein interacting protein 7 (.1) Potri.013G137688 [exp] 44 / 7e-06 ATCG00820 169 / 1e-56 ribosomal protein S19 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00203 [flax] [poplar] Ribosomal_S19 Ribosomal protein S19 PF03208 [flax] [poplar] PRA1 PRA1 family protein
Representative CDS sequence Show only first row Show all	>Lus10041168 pacid=23179805 polypeptide=Lus10041168 locus=Lus10041168.g ID=Lus10041168.BGIv1.0 annot-version=v1.0 ATGGCGGATGTGGAAGCAGACGTTGCTGTTCCTGGACAGCCGAAGAAGAGAACGTTTAAGAAGTTTAGCTTCAGAGGTGTGGACTTGGACGCACTTCTCG ATATGTCCACTGATGATCTTGTTAAGCTCTTCACTGCTCGTGCCCGTAGAAGGTTCCAGAGAGGGCTGACCAGGAAGCCTATGGCTTTGGTCAAGAAGCT GCGCAAGGCTAAAAGGGAGGCACCAGCAGGGGAGAAGCCAGAGCCAGTGAGGACTCACCTCCGCAATATGATCATTGTCCCTGAAATGATCGGGAGCGTG ATTGGTGTGTACAATGGGAAAACGTTCAACCAAGTTGAGATCAAGCCAGAGATGATTGGTCACTACCTGGCTGAATTTTCCATTTCATACAAGCCTGTGA AGCACGGTAGGCCTGGTATTGGTGCTACTCACTCCTCTAGCCTGATTACCCGCCCTTTGGCTTTGATCGCCTTCTTCGTCGCGCTCCTTGCTTGGATCAT CCTCTACTTCGCTCGAGATGAGCCGCTCTCTATTTTTGGGTTCGAGGTCAATGATTGGGCCGTGCTGGCGGCGCTTCTACTTGCGTCGGTTGTGATTTTG TCGGTCTCCGGGATCTGGGTTACTGTGATTGTTGCTGGATTGGTTGCTGCGGGATTGGTGGTTTTGCACGCCGCGTTGAGGAGCACGGATGATTTGGTGG CCAACGAATTCGAGGCATCCCCTTACGGGGACTTGCTATCCGACGACGATAGTCCGGAAGCCGGCGGATCTTACTCCCAGATTTGA
AA sequence Show only first row Show all	>Lus10041168 pacid=23179805 polypeptide=Lus10041168 locus=Lus10041168.g ID=Lus10041168.BGIv1.0 annot-version=v1.0 MADVEADVAVPGQPKKRTFKKFSFRGVDLDALLDMSTDDLVKLFTARARRRFQRGLTRKPMALVKKLRKAKREAPAGEKPEPVRTHLRNMIIVPEMIGSV IGVYNGKTFNQVEIKPEMIGHYLAEFSISYKPVKHGRPGIGATHSSSLITRPLALIAFFVALLAWIILYFARDEPLSIFGFEVNDWAVLAALLLASVVIL SVSGIWVTVIVAGLVAAGLVVLHAALRSTDDLVANEFEASPYGDLLSDDDSPEAGGSYSQI

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G09510			Ribosomal protein S19 family p...		Lus10041168 [exp]	0	1
AT5G64140		RPS28	ribosomal protein S28 (.1)		Lus10013543 [exp]	1.0	0.8944
AT2G36930	C2H2ZnF		zinc finger (C2H2 type) family...		Lus10014426 [exp]	1.4	0.8942
AT3G61110		ARS27A	ribosomal protein S27 (.1)		Lus10035128 [exp]	2.4	0.8709
AT1G31817		NFD3	NUCLEAR FUSION DEFECTIVE 3, Ri...		Lus10007591 [exp]	6.7	0.8153
AT5G09500			Ribosomal protein S19 family p...		Lus10021886 [exp]	8.2	0.8635
AT4G31460			Ribosomal L28 family (.1)		Lus10028995 [exp]	9.4	0.8322
AT2G45640		ATSAP18, HDA19	SIN3 ASSOCIATED POLYPEPTIDE 18...		Lus10041388 [exp]	9.5	0.8321
AT5G12110			Glutathione S-transferase, C-t...		Lus10026784 [exp]	13.0	0.8542
AT1G16740			Ribosomal protein L20 (.1)		Lus10034785 [exp]	15.9	0.6715
AT1G61700			RNA polymerases N / 8 kDa subu...		Lus10025907 [exp]	22.4	0.7877

Compare expression of checked genes

Lus10041168 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.