Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G64560 123 / 2e-33 MRS2-2, ATMGT9 magnesium transporter 9 (.1.2) AT5G09690 108 / 3e-28 MRS2-7, ATMGT7 ARABIDOPSIS THALIANA MAGNESIUM TRANSPORTER 7, magnesium transporter 7 (.1.2.3.4) AT5G09720 92 / 2e-22 Magnesium transporter CorA-like family protein (.1) AT3G58970 73 / 5e-15 MRS2-4, MGT6 magnesium transporter 6 (.1) AT1G16010 69 / 1e-13 AtMRS2-1, AtMGT2, MRS2-1, MGT2 magnesium transporter 2 (.1.2.3) AT1G80900 67 / 4e-13 MRS2-10, ATMGT1 magnesium transporter 1 (.1) AT4G28580 63 / 1e-11 MRS2-6, ATMGT5 ARABIDOPSIS THALIANA MAGNESIUM TRANSPORT 5, magnesium transport 5 (.1) AT5G09710 57 / 7e-10 Magnesium transporter CorA-like family protein (.1) AT2G03620 54 / 1e-08 AtMRS2-5, AtMGT3, MRS2-5, MGT3 magnesium transporter 3 (.1.2) AT3G19640 53 / 3e-08 MRS2-3, MGT4 magnesium transporter 4 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10021887 [exp] 152 / 2e-44 AT5G64560 574 / 0.0 magnesium transporter 9 (.1.2) Lus10008803 [exp] 139 / 2e-39 AT5G64560 570 / 0.0 magnesium transporter 9 (.1.2) Lus10022218 [exp] 142 / 3e-39 AT5G09690 513 / 1e-179 ARABIDOPSIS THALIANA MAGNESIUM TRANSPORTER 7, magnesium transporter 7 (.1.2.3.4) Lus10024860 [exp] 87 / 6e-20 AT5G09690 478 / 3e-169 ARABIDOPSIS THALIANA MAGNESIUM TRANSPORTER 7, magnesium transporter 7 (.1.2.3.4) Lus10001373 [exp] 74 / 2e-15 AT3G58970 450 / 2e-158 magnesium transporter 6 (.1) Lus10015459 [exp] 73 / 5e-15 AT3G58970 560 / 0.0 magnesium transporter 6 (.1) Lus10026063 [exp] 70 / 7e-14 AT1G16010 744 / 0.0 magnesium transporter 2 (.1.2.3) Lus10014353 [exp] 70 / 7e-14 AT1G16010 745 / 0.0 magnesium transporter 2 (.1.2.3) Lus10036901 [exp] 61 / 5e-11 AT2G03620 388 / 4e-134 magnesium transporter 3 (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G077900 [exp] 122 / 3e-33 AT5G64560 531 / 0.0 magnesium transporter 9 (.1.2) Potri.008G161400 [exp] 119 / 6e-32 AT5G64560 552 / 0.0 magnesium transporter 9 (.1.2) Potri.006G081700 [exp] 73 / 4e-15 AT3G58970 538 / 0.0 magnesium transporter 6 (.1) Potri.003G183600 [exp] 72 / 7e-15 AT1G16010 699 / 0.0 magnesium transporter 2 (.1.2.3) Potri.001G043200 [exp] 71 / 2e-14 AT1G16010 637 / 0.0 magnesium transporter 2 (.1.2.3) Potri.007G098200 [exp] 66 / 1e-12 AT1G80900 301 / 1e-98 magnesium transporter 1 (.1) Potri.007G098000 [exp] 62 / 2e-11 AT1G80900 252 / 2e-79 magnesium transporter 1 (.1) Potri.010G158100 [exp] 61 / 5e-11 AT2G03620 417 / 2e-144 magnesium transporter 3 (.1.2) Potri.009G086300 [exp] 58 / 5e-10 AT3G19640 431 / 4e-148 magnesium transporter 4 (.1) Potri.008G096200 [exp] 57 / 2e-09 AT2G03620 438 / 1e-152 magnesium transporter 3 (.1.2)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10041169 pacid=23179695 polypeptide=Lus10041169 locus=Lus10041169.g ID=Lus10041169.BGIv1.0 annot-version=v1.0 ATGTCTAATGGGGGTGCTTCTCCAACAGTAAAAAAGGTATTGCTGAGAGATCCAGCGGATGAAAATGTTGTACCTGTTGTTGAGGAGCTTCGGAGGCGAT TACCACTTGCAAATGACACTCACCAAGAAGATCTAGCAAATGGAAAAAATCATGGGACCCGGCAAACTGATGCTGTAGGGGGTGAAGATGACGAATCTCC TTTCGAATTCCGTGCTCTGGAGGTTGCTTTGGAATCCATTTGTAGCTTTCTAGCTGCACGTACAACAGAGTTAGAGACTGCTGCTTATCCGGCATTGGAT GAACTTGATATTCTCAGCCGCAATTTGGATAGAGTTCGTAAACTAAAGAGTGCCATGACACGATTGACTGCTCGAGTTCAGAAAGTCCGGGACGAGCTTG AACAGTTACTGGATGATGATGATGATATGGCTGACCTTTACTTGCTGGTGCTACTTCACCAGGCAAGCAGAGCAAGCTTGGCTACAGTTGGTGGTGATGA GAATGATGTTGAGGAGCTTGAAATGTTATTAGAGGTGGTGATCTTAACAGAGATATTCTGCACACTTGTATTCCTGGGAATCATGTCCTATGCTCGCTAC AAGGGCTTGGTTGGATCTTGA
AA sequence Show only first row Show all	>Lus10041169 pacid=23179695 polypeptide=Lus10041169 locus=Lus10041169.g ID=Lus10041169.BGIv1.0 annot-version=v1.0 MSNGGASPTVKKVLLRDPADENVVPVVEELRRRLPLANDTHQEDLANGKNHGTRQTDAVGGEDDESPFEFRALEVALESICSFLAARTTELETAAYPALD ELDILSRNLDRVRKLKSAMTRLTARVQKVRDELEQLLDDDDDMADLYLLVLLHQASRASLATVGGDENDVEELEMLLEVVILTEIFCTLVFLGIMSYARY KGLVGS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G64560		MRS2-2, ATMGT9	magnesium transporter 9 (.1.2)		Lus10041169 [exp]	0	1
AT5G16020		GEX3	gamete-expressed 3 (.1)		Lus10034090 [exp]	2.8	0.8611
AT1G27680		APL2	ADPGLC-PPase large subunit (.1...		Lus10010088 [exp]	3.5	0.8412
AT1G25260			Ribosomal protein L10 family p...		Lus10001072 [exp]	4.2	0.8511
AT1G26660			Prefoldin chaperone subunit fa...		Lus10026631 [exp]	5.3	0.8362
AT3G58130			N-acetylglucosaminylphosphatid...		Lus10034805 [exp]	5.5	0.8352
AT5G61970			signal recognition particle-re...		Lus10040614 [exp]	6.0	0.8133
AT2G17280			Phosphoglycerate mutase family...		Lus10001381 [exp]	7.5	0.8149
AT5G46030			unknown protein		Lus10025438 [exp]	8.5	0.8206
AT3G11620		BAS1	alpha/beta-Hydrolases superfam...		Lus10016976 [exp]	15.7	0.7639
AT5G66460		MAN7, AtMAN7	endo-beta-mannase 7, Glycosyl ...		Lus10007210 [exp]	15.8	0.8088

Compare expression of checked genes

Lus10041169 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.