Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G43710 884 / 0 Glycosyl hydrolase family 47 protein (.1) AT1G27520 441 / 7e-148 Glycosyl hydrolase family 47 protein (.1) AT1G51590 196 / 1e-54 MNS1, MANIB ALPHA-MANNOSIDASE IB, alpha-mannosidase 1 (.1.2) AT3G21160 192 / 3e-53 MNS2, MANIA ALPHA-MANNOSIDASE IA, alpha-mannosidase 2 (.1) AT1G30000 168 / 3e-44 MNS3 alpha-mannosidase 3 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10021888 [exp] 1116 / 0 AT5G43710 853 / 0.0 Glycosyl hydrolase family 47 protein (.1) Lus10042143 [exp] 419 / 2e-139 AT1G27520 886 / 0.0 Glycosyl hydrolase family 47 protein (.1) Lus10004233 [exp] 223 / 3e-66 AT1G27520 515 / 0.0 Glycosyl hydrolase family 47 protein (.1) Lus10034820 [exp] 197 / 4e-55 AT1G51590 887 / 0.0 ALPHA-MANNOSIDASE IB, alpha-mannosidase 1 (.1.2) Lus10035727 [exp] 191 / 1e-52 AT1G51590 877 / 0.0 ALPHA-MANNOSIDASE IB, alpha-mannosidase 1 (.1.2) Lus10037312 [exp] 189 / 7e-52 AT1G51590 865 / 0.0 ALPHA-MANNOSIDASE IB, alpha-mannosidase 1 (.1.2) Lus10033368 [exp] 176 / 5e-47 AT1G51590 747 / 0.0 ALPHA-MANNOSIDASE IB, alpha-mannosidase 1 (.1.2) Lus10042830 [exp] 166 / 1e-43 AT1G30000 846 / 0.0 alpha-mannosidase 3 (.1) Lus10028127 [exp] 88 / 3e-18 AT1G30000 622 / 0.0 alpha-mannosidase 3 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G160900 [exp] 969 / 0 AT5G43710 908 / 0.0 Glycosyl hydrolase family 47 protein (.1) Potri.015G071400 [exp] 431 / 6e-144 AT1G27520 931 / 0.0 Glycosyl hydrolase family 47 protein (.1) Potri.012G076600 [exp] 358 / 8e-115 AT1G27520 657 / 0.0 Glycosyl hydrolase family 47 protein (.1) Potri.008G007500 [exp] 198 / 2e-55 AT1G51590 885 / 0.0 ALPHA-MANNOSIDASE IB, alpha-mannosidase 1 (.1.2) Potri.018G141100 [exp] 194 / 9e-54 AT1G51590 813 / 0.0 ALPHA-MANNOSIDASE IB, alpha-mannosidase 1 (.1.2) Potri.004G132300 [exp] 167 / 8e-44 AT1G30000 934 / 0.0 alpha-mannosidase 3 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0059 [flax] [poplar] 6_Hairpin PF01532 [flax] [poplar] Glyco_hydro_47 Glycosyl hydrolase family 47
Representative CDS sequence Show only first row Show all	>Lus10041170 pacid=23179700 polypeptide=Lus10041170 locus=Lus10041170.g ID=Lus10041170.BGIv1.0 annot-version=v1.0 ATGGCGGCAGGACGACGATCGCCGAACCTCTTGCTCCTTCTTCACTTGTTATTTCAGTTTCTGGTCTTACTCTTCCTCCCATCAGCCCTAGCCGATGGCG TATCTTCCTTGGAGGCCAAGCATATCCGTGATGAGGTACCTCCTTTTCACCTTCACAGCAATACTTGTGTATTTGAATCGATTCTTGTACCAACTCCTTC CGTTATCCGAGTCAATCTGCCTGTTGCTGCTATCGACCTCTTTGGATTTCGTTTTCTAGATCTACGAGTGTGGCGAATGTGCTTGGTCCGCGAAATGTTC TATCACGCTTTTGATGGATATATGAACAACGCTTTCCCGCTTGACGAATTGAAGCCTCTGTCATGTCAAGGTGAAGATTCGCTTGGTGGCTATGCACTCA CTCTGATTGACTCTTTGGATACACTTGCTCTACTTGGGGATAGAGAGAGGTTCACCTCCTCGGTTGATTGGATTGGTAAAAATCTACGGTTTGATATAAA CAAGACGGTGTCAGTTTTCGAGACATCCATCCGGGTTCTTGGAGGCTTACTTTCCGCCCATCTTATAGCAAGTGATTACGCCACGGGTATGCGGATTCCA TCTTATGACAATCAATTACTCAACCTAGCTGAGGATTTAGGCCGGAGAATGTTACCTGCATTTGTCACTCCAACAGGAATTCCATTTGGTTCTGTTAACC TACTGCATGGAGTTGACGAACATGAAAGCAAGATAACATCAACTGCTGGTGGGGGGACTTTGACATTAGAATTTGGGGTGCTCAGTCGATTAACCAATGA TCCAATTTTTGAACAAGTGACCAAAAAATCTGTTCGTGGATTATGGGCACGTCGCTCAAGGCTGAACTTAGTTGGTGCACATATCAATGTATTTACAGGT GAATGGACACAAAAGGATGCTGGAATTGGAACCAGCATTGACTCCTTCTACGAGTATCTCTTGAAGGCTTATCTACTATTTGGAGATGAGGAGTATTTGT TTATTTTCCAAGAAGCATATGCTGCTGCTATGAAGTATCTGTTTAATGATCCTTGGTATGTTGAGGTAAATATGGATTCCGCTGCTATTGTCTGGCCTTT ATTCAACAGCTTGCAGGCATTCTGGCCAGGCCTTCAGGTGTTAGCAGGAGACATCAATCCAGCTATCCGAACACATGATGCCTTTTTTAGTGTCTGGAGA AGATATGGTTTCACTCCTGAAGGTTTTAATCTGGCTACTTTAACTGTTCAGAGTGGGCAGAAGAGTTATCCGTTGCGGCCAGAGTTGATAGAAAGTACGT ACTGGCTCTACAAAGCTACCAGAGATCCCAGATATCTTGATGTGGGAAGGGACATGGTTGCTAGTCTTCAGTATGGGGCTCGGTGTCCTTGTGGATATTG TCATATCACAGATGTAGAGTCGCATCAAATTGAAGATCACATGGAGAGCTTCTTCTTAGCTGAAACAGTTAAATACCTCTGGCTTCTTTTTGACTTAGCT TCTGGTGCTGACAATCTTGTGGAAAATGGGCCGTACAAGTATATCTTCAGTACAGAAGGCCACTTGTTGCCTGCAACTCCACAAATAGCCCTTGTAAGGG AGCATTGTTCCTATTTTGGTGCATACTGTAAAAGCAGCGATGTTAAACAAGAAAGTGGTAGATCAGAGACATCAAATCACCCTGAAGCTAATTCCAGTAC ATCTTATGGTAACTGGATTCATCGAGGATACTCATCAGATTCTTCTTCTTTTGTTGAGTCGATTAATCCATCAGGGATAGGATTGATAAAAGGGCTTTGC CCTGGGTTAACACATGGGCAAAGATATGGCATCTCATACGTAGACTCGACTCAAAGGACTCCCACTAGCCCTGCACCAGAAAAAGAGATGGTGGTTGACA ACCCGCCTCTTATTCTAATTTCGGATTTAAGTGCTGGCAATTCCATGTCTTTTAGGGGCGATGATGATGCCCAGAAATCAAGCCAGGAAGAATGA
AA sequence Show only first row Show all	>Lus10041170 pacid=23179700 polypeptide=Lus10041170 locus=Lus10041170.g ID=Lus10041170.BGIv1.0 annot-version=v1.0 MAAGRRSPNLLLLLHLLFQFLVLLFLPSALADGVSSLEAKHIRDEVPPFHLHSNTCVFESILVPTPSVIRVNLPVAAIDLFGFRFLDLRVWRMCLVREMF YHAFDGYMNNAFPLDELKPLSCQGEDSLGGYALTLIDSLDTLALLGDRERFTSSVDWIGKNLRFDINKTVSVFETSIRVLGGLLSAHLIASDYATGMRIP SYDNQLLNLAEDLGRRMLPAFVTPTGIPFGSVNLLHGVDEHESKITSTAGGGTLTLEFGVLSRLTNDPIFEQVTKKSVRGLWARRSRLNLVGAHINVFTG EWTQKDAGIGTSIDSFYEYLLKAYLLFGDEEYLFIFQEAYAAAMKYLFNDPWYVEVNMDSAAIVWPLFNSLQAFWPGLQVLAGDINPAIRTHDAFFSVWR RYGFTPEGFNLATLTVQSGQKSYPLRPELIESTYWLYKATRDPRYLDVGRDMVASLQYGARCPCGYCHITDVESHQIEDHMESFFLAETVKYLWLLFDLA SGADNLVENGPYKYIFSTEGHLLPATPQIALVREHCSYFGAYCKSSDVKQESGRSETSNHPEANSSTSYGNWIHRGYSSDSSSFVESINPSGIGLIKGLC PGLTHGQRYGISYVDSTQRTPTSPAPEKEMVVDNPPLILISDLSAGNSMSFRGDDDAQKSSQEE

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G43710			Glycosyl hydrolase family 47 p...		Lus10041170 [exp]	0	1
AT2G46180		GC4	golgin candidate 4 (.1)		Lus10041081 [exp]	1.7	0.9332
AT2G46180		GC4	golgin candidate 4 (.1)		Lus10036406 [exp]	2.8	0.9238
AT1G75850		VPS35B	VPS35 homolog B (.1)		Lus10013565 [exp]	3.9	0.9023
AT3G14205			Phosphoinositide phosphatase f...		Lus10037446 [exp]	4.5	0.8909
AT1G55250		HUB2, HISTONEMO...	histone mono-ubiquitination 2 ...		Lus10024057 [exp]	5.3	0.9001
AT1G75850		VPS35B	VPS35 homolog B (.1)		Lus10017272 [exp]	5.5	0.8894
AT1G04910			O-fucosyltransferase family pr...		Lus10037830 [exp]	7.4	0.8678
AT5G43710			Glycosyl hydrolase family 47 p...		Lus10021888 [exp]	11.0	0.8735
AT1G11660			heat shock protein 70 (Hsp 70)...		Lus10040078 [exp]	11.3	0.8546
AT4G32160			Phox (PX) domain-containing pr...		Lus10002925 [exp]	14.0	0.8811

Compare expression of checked genes

Lus10041170 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.