Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G33580 223 / 2e-64 Protein kinase superfamily protein (.1) AT1G51940 197 / 3e-55 protein kinase family protein / peptidoglycan-binding LysM domain-containing protein (.1) AT2G23770 196 / 7e-55 protein kinase family protein / peptidoglycan-binding LysM domain-containing protein (.1) AT3G21630 193 / 1e-53 LYSMRLK1, CERK1 LYSM DOMAIN RECEPTOR-LIKE KINASE 1, chitin elicitor receptor kinase 1 (.1) AT4G02010 192 / 7e-53 Protein kinase superfamily protein (.1) AT1G10620 189 / 1e-51 AtPERK11 proline-rich extensin-like receptor kinase 11, Protein kinase superfamily protein (.1) AT3G59110 184 / 3e-51 Protein kinase superfamily protein (.1) AT3G24790 180 / 3e-51 Protein kinase superfamily protein (.1) AT1G70460 186 / 7e-51 AtPERK13, RHS10 proline-rich extensin-like receptor kinase 13, root hair specific 10 (.1) AT2G28590 180 / 1e-50 Protein kinase superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10021889 [exp] 716 / 0 AT2G23770 256 / 2e-77 protein kinase family protein / peptidoglycan-binding LysM domain-containing protein (.1) Lus10039406 [exp] 581 / 0 AT2G33580 229 / 4e-68 Protein kinase superfamily protein (.1) Lus10021890 [exp] 291 / 1e-95 AT5G43750 243 / 4e-82 Photosynthetic NDH subcomplex B 5, NAD(P)H dehydrogenase 18 (.1) Lus10000577 [exp] 236 / 4e-69 AT2G23770 490 / 1e-166 protein kinase family protein / peptidoglycan-binding LysM domain-containing protein (.1) Lus10008586 [exp] 235 / 2e-68 AT2G33580 594 / 0.0 Protein kinase superfamily protein (.1) Lus10019661 [exp] 229 / 1e-66 AT2G23770 483 / 8e-164 protein kinase family protein / peptidoglycan-binding LysM domain-containing protein (.1) Lus10016299 [exp] 220 / 2e-63 AT2G23770 368 / 3e-119 protein kinase family protein / peptidoglycan-binding LysM domain-containing protein (.1) Lus10030022 [exp] 212 / 5e-61 AT3G21630 692 / 0.0 LYSM DOMAIN RECEPTOR-LIKE KINASE 1, chitin elicitor receptor kinase 1 (.1) Lus10037586 [exp] 213 / 1e-60 AT1G51940 807 / 0.0 protein kinase family protein / peptidoglycan-binding LysM domain-containing protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G160600 [exp] 555 / 0 AT2G33580 217 / 8e-62 Protein kinase superfamily protein (.1) Potri.010G078700 [exp] 536 / 0 AT2G23770 288 / 5e-89 protein kinase family protein / peptidoglycan-binding LysM domain-containing protein (.1) Potri.005G259600 [exp] 249 / 3e-74 AT2G33580 637 / 0.0 Protein kinase superfamily protein (.1) Potri.005G128200 [exp] 241 / 3e-71 AT2G23770 514 / 4e-176 protein kinase family protein / peptidoglycan-binding LysM domain-containing protein (.1) Potri.014G040000 [exp] 238 / 1e-70 AT2G23770 345 / 1e-110 protein kinase family protein / peptidoglycan-binding LysM domain-containing protein (.1) Potri.007G032100 [exp] 225 / 5e-65 AT2G23770 513 / 6e-175 protein kinase family protein / peptidoglycan-binding LysM domain-containing protein (.1) Potri.005G128300 [exp] 219 / 4e-63 AT2G23770 394 / 2e-129 protein kinase family protein / peptidoglycan-binding LysM domain-containing protein (.1) Potri.007G032300 [exp] 213 / 4e-61 AT2G33580 247 / 6e-73 Protein kinase superfamily protein (.1) Potri.002G226600 [exp] 213 / 6e-61 AT3G21630 697 / 0.0 LYSM DOMAIN RECEPTOR-LIKE KINASE 1, chitin elicitor receptor kinase 1 (.1) Potri.014G156400 [exp] 211 / 2e-60 AT3G21630 678 / 0.0 LYSM DOMAIN RECEPTOR-LIKE KINASE 1, chitin elicitor receptor kinase 1 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [flax] [poplar] PKinase PF00069 [flax] [poplar] Pkinase Protein kinase domain
Representative CDS sequence Show only first row Show all	>Lus10041171 pacid=23179869 polypeptide=Lus10041171 locus=Lus10041171.g ID=Lus10041171.BGIv1.0 annot-version=v1.0 ATGGCGGCTTTATGCCTGTCCTTTACTTCCTCTGTTTCATTGCCCAGAATCACACCAACAAAATCTACGCAATTCGCCATTGGTAAGAACCTTCATCTCT CGAACCATAGCAGTCAAAGCGGCAGCAGAAGCTGGACGAGTCGACTCCGAGCTGCTGGGTTGTCAGAGATCGAGCCCGATCTGAACGAGGATCCAGTTGA CATCTGGCGCACTCCTGGAATCGATCCAGAAGATTTTGAGTACGGAATCTACGATGGGCATCATACTTACTTCGAAACCGGGGAGGACGAAGGAAGCTTT TGGGGTGCGATTGCCGACGACATCAAAGGTGTAGGAGCTCCCACCGGTTTTCAAGGAATCATATCGTGGCTTTTCCTACCAGCAGTGTTCGCTGGGATGT ACTACCATATTCCTGGCGAGTTACTATTCGGCGGGGCAGCACTATTTGCGACGGTGTTCCCTTCCGATAATCTGTCCACAGTGGCTTCAACGTTTGGGGT TTCACTGAAATCGATTGTCGATGTTAATGGGAACGGTGTAAAGCCTCTGGACACGATATTCATTCCAGTGAATAGCCTGCCGATTCTGAGGCAGGGGAAT TCGAACTCAACGAATTCGAATTCGAATTCCTCGTCTTCGTCGTCGTCTTCTACGGAGAGGAAAGGTTTGATGATAGGATTGGTTGTAGGGATTGGGGTTT GTTTGGGTTTGCTGGTTTTGGTCCTTGTGACTTGGATTCACAGGGAGAGGAGGTTTGGGAAAGGGATGGATGGGGAGAAGTGGAGGCGGGAAGTTTATAA CATGGAAAGAGGAGGGAAAAAAGGGTTGGAGGAAATGGAGGAGAATGTAATGGCGGATGTGTCAGAGTGCTTGGATAAGTATAGGGTGTTTAAGATGGAG GAGCTGAAAGTAGCTACGAATGGATTTGAGGAGGAGTGTGTGATTGAAGGGTCTGTTTATAAAGGGAAGATAGGTGGAGTTGATTATGCTATCAAGAAGA TGAAGTGGAATGCTACGGAAGAGCTCAAGATCTTGCAAAAGGTCAACCATGGCAATTTAGTCCAACTAGAAGGCTTCTGCATCGACTCTCAAGACGCAGA TTGCTACCTAGTTTACGAATTCATCGAAAACGGCTCGCTCCACTCATGGCTCCACACCAACAAGACCAAAAAGTTGAGTTGGAAAACAAGGGTCCGAATC GCCATCGACGTAGCGAACGGCCTCCAGTACATCCACGAGCACACTAGGCCGAGAGTTGTACACAAGGACATCAAAGCCGCCAACATCCTCCTCGACGCCA ACATGAGGGCCAAAATAGCCAATTTCGGGCTGGCCAAATCGGGCTGCAACGCCATCACGATGCACATCGTGGGGACCCAGGGCTACATCGCGCCCGAGTA CATGGCCGACGGGATTGTCTCCACCAAGATGGATGTGTTTGCTTTCGGGGTGGTTCTGCTCGAGCTCGTCTCCGGGAAGGAGGCTAGTGACGAGGAAGGT AACGTGCTGTGGGAGGAAGTCGACGAGATTATGATCGAAGGGAATGTGAGAAGATGGGTTGATGAAGCTCTTATGGAGGAGTCGTACCCGATCGAGAGCA TATTGAATGTGATGACGGTGGCGGCTGCTTGTGTGGATATTGATCCGGGGAAGAGACCGAACATGATGGATGTTGTTTATGCTTTGTGTCGAAGTGATGA GTTGTTTTTTGATGTTGCGGAGGAGGGTCGTGGGTTGTCCAATTCCAAGGTGACCGTTAGATAG
AA sequence Show only first row Show all	>Lus10041171 pacid=23179869 polypeptide=Lus10041171 locus=Lus10041171.g ID=Lus10041171.BGIv1.0 annot-version=v1.0 MAALCLSFTSSVSLPRITPTKSTQFAIGKNLHLSNHSSQSGSRSWTSRLRAAGLSEIEPDLNEDPVDIWRTPGIDPEDFEYGIYDGHHTYFETGEDEGSF WGAIADDIKGVGAPTGFQGIISWLFLPAVFAGMYYHIPGELLFGGAALFATVFPSDNLSTVASTFGVSLKSIVDVNGNGVKPLDTIFIPVNSLPILRQGN SNSTNSNSNSSSSSSSSTERKGLMIGLVVGIGVCLGLLVLVLVTWIHRERRFGKGMDGEKWRREVYNMERGGKKGLEEMEENVMADVSECLDKYRVFKME ELKVATNGFEEECVIEGSVYKGKIGGVDYAIKKMKWNATEELKILQKVNHGNLVQLEGFCIDSQDADCYLVYEFIENGSLHSWLHTNKTKKLSWKTRVRI AIDVANGLQYIHEHTRPRVVHKDIKAANILLDANMRAKIANFGLAKSGCNAITMHIVGTQGYIAPEYMADGIVSTKMDVFAFGVVLLELVSGKEASDEEG NVLWEEVDEIMIEGNVRRWVDEALMEESYPIESILNVMTVAAACVDIDPGKRPNMMDVVYALCRSDELFFDVAEEGRGLSNSKVTVR

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G33580			Protein kinase superfamily pro...		Lus10041171 [exp]	0	1
AT5G43750		PnsB5, NDH18	Photosynthetic NDH subcomplex...		Lus10021890 [exp]	1.0	0.9731
AT5G38660		APE1	acclimation of photosynthesis ...		Lus10017574 [exp]	1.4	0.9652
AT5G13720			Uncharacterised protein family...		Lus10019743 [exp]	2.4	0.9531
AT1G16880		ACR11	ACT domain repeats 11, uridyly...		Lus10033395 [exp]	4.6	0.9359
AT3G15850		JB67, FADB, ADS...	FATTY ACID DESATURASE B, fatty...		Lus10011488 [exp]	6.5	0.9299
AT1G76450			Photosystem II reaction center...		Lus10030719 [exp]	6.6	0.9465
AT1G73110			P-loop containing nucleoside t...		Lus10041627 [exp]	6.7	0.9458
AT3G25690		AtCHUP1, CHUP1	Arabidopsis thaliana CHLOROPLA...		Lus10034264 [exp]	7.6	0.8903
AT3G10130			SOUL heme-binding family prote...		Lus10022712 [exp]	7.7	0.9111
AT1G16880		ACR11	ACT domain repeats 11, uridyly...		Lus10034852 [exp]	8.7	0.9144

Compare expression of checked genes

Lus10041171 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.