Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G23020 954 / 0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT1G73710 514 / 2e-168 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT5G02860 217 / 3e-59 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT2G02150 196 / 1e-52 EMB2794 EMBRYO DEFECTIVE 2794, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT1G62930 187 / 5e-50 RPF3 RNA processing factor 3, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT2G18940 188 / 2e-49 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT1G62670 184 / 4e-49 RPF2 rna processing factor 2 (.1) AT1G62910 184 / 4e-49 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT1G63330 179 / 9e-48 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT1G63130 180 / 1e-47 Tetratricopeptide repeat (TPR)-like superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10021891 [exp] 598 / 0 AT3G23020 282 / 2e-88 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10002107 [exp] 204 / 5e-55 AT5G02860 1040 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10013894 [exp] 203 / 3e-54 AT5G02860 1047 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10015530 [exp] 189 / 1e-49 AT2G18940 1010 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10020002 [exp] 187 / 5e-49 AT2G18940 1015 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10003424 [exp] 187 / 7e-49 AT4G31850 1373 / 0.0 proton gradient regulation 3 (.1) Lus10006962 [exp] 178 / 3e-46 AT2G18940 976 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10010410 [exp] 178 / 5e-46 AT5G59900 998 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10025473 [exp] 177 / 5e-46 AT2G18940 970 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G078900 [exp] 1155 / 0 AT3G23020 1046 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.013G144800 [exp] 528 / 2e-173 AT1G73710 1206 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.006G166200 [exp] 208 / 2e-56 AT2G18940 1082 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.009G092100 [exp] 208 / 3e-56 AT5G02860 1146 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.001G297300 [exp] 203 / 1e-54 AT5G02860 1129 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.006G264800 [exp] 204 / 3e-54 AT4G31850 1428 / 0.0 proton gradient regulation 3 (.1) Potri.001G276500 [exp] 185 / 6e-49 AT5G01110 863 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.010G098400 [exp] 178 / 2e-46 AT2G02150 924 / 0.0 EMBRYO DEFECTIVE 2794, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.010G014100 [exp] 177 / 6e-46 AT3G06920 1404 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.017G075700 [exp] 171 / 1e-44 AT5G39980 1045 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0020 [flax] [poplar] TPR PF01535 [flax] [poplar] PPR PPR repeat
Representative CDS sequence Show only first row Show all	>Lus10041172 pacid=23179813 polypeptide=Lus10041172 locus=Lus10041172.g ID=Lus10041172.BGIv1.0 annot-version=v1.0 ATGTTTGCGAAGCTCCAGTTAGATTCCAACTGCTTTCCTGGAGTTACTTCTCTGTCCAAGTCTTCCTCACCAACTCAAGGAGTTTCTATCCCCACCAAGT CTGGAGCTAAGGCCATTGTGAAGCTCCGAGAACAGAGAATTCTACAAAATTCTCAAGGAGTTGCAGAAAAGCATAATGGGGATCGGAGAACCAAAGCGAA TCAGAAACCAGGTATAGTCTTCAGTCCTGAATTGGAATTCCCAGATAGGAGCAGAACTACGGCGAACCGATCTGGAACTCGTATGGGGAAGAATCTTGGT GAGGAATTGAGTAGAGTGGAAGGAAATGCTTACGTGTGTAAAGAGCACACCAAGTGTTCGACGAAATGGGCCTTTTACGGAGGTTCTATTCCGGCCATTT TACAAGCGTTGGACACGGTGAAGGACTTGGACGAGGCGTTGCATCCTTGGGAGCATACTCTCAATAACAAAGTGAGGAGCATAATATTGAAGGAGCAGTT GTGCTGGGAAAGGGCTCTTGAGATCTTTGAGTGGTTTAAGAACAAGAGATGTTACGAGTTGAATGTTATCCACTACAACATTATGCTAAAGATTCTGGGG AAAGTGAAAAAGTGGAGCCTTGTTGAATCTCTTTGTCAGGAAATGGCGGCCAAACGAATTTCTTTCATCAATTCAACTTACGGCACTCTTATTGATGTAT ATAGTAAAGGTGGCCTTAAAGAGAAGGCACTTTGGTGGCTGGAGAAGATGAACCAGCAAGGGATCCAACCGGATGAGGTGACGACAGGGATCGTTATGCA AATGTACAAGAAAGCTGGCGAGTTTCGGAAAGTCGAAGACTTTTTCAAGCAATGGACGTCAATGGATGATGGGTTGCGAGAGGATTATTCGGTAAGTTCG TACACGTACAATACTTTGATAGACACATATGGAAAATCAGGTCAGATTGAAGAAGCGTCCAAGATCTTTGCACAGATGCTGAGAGAAGGGATTGTGCCAA CAACCGTGACTTTCAATACAATGATTCACATCTGTGGTAACAATGGCCACCTTGATGAAGTGACGTCACTTATTCTAAAGATGGAGGATCTTCGTTGTCC ACTTGACACGAGGACATACAACATTCTAATTTCGCTTTACGCAAAGCACGATGATATAGACTTGGCAGCTCAGTATTTCAGGAGGATGAAGGAGGATCGA CTAGAGCCGGATTCGGTAGGCTACCGTACCTTGCTCTATGCATTCTCCATAAGGAACATGGTGAGTAATGCAGAGAATCTGGTATCAGAGATGGATGAAA AAGGATTGAAGATTGACGAGTATACCCAGTCTGCTTTGACAAGAATGTACATAGACGCTGGGATGCTTGAGAAATCTTGGTTATGGTTCAGAAGGTTTCA TCTAGCAGGAGATATGACCTCTGAAGGCTATGCTGCTAATATCGATGCATATGGCGACCGTGGGCATATTTCGGAAGCTGAGAGGGTGTTTTCTTGCTCC AAGGAGAATGGGAAATTGAGTGTTCTTGAATTTAACGTGATGATTAAAGCATACGGGTTTGTGAAGAATTATGACAAGGGTTGTCAGTTATTCGATAGTA TCGAAAGTCACGGGTGTATACCAGATAAGTGTAGTTATGGAACTCTTGTACAGATATTAGCCAGCGGTGATTTGCCTGACAAAGCACAGCATTATCTGAA ACGGATGCAAGAACAAGGTTTGGTTTCGGTTAGTGATTGCTTGACATACTGTGTTGTGATATCTTGCTTTGCGAAATCAGGAAGATTGGGTATGGCTAAG AAGGTGTATGAAGAAATGATTGGTTTGGATGTTAAGCCAGATGTTCAGGTGTATGGAATATTGATAAACGCTTCTGCAGATGCTGGAAACGTTGTAGAAG CTATGGAATACATGGATGCAATGAAAGAAAATGGAATTCGAGGAAATGCTATAATTTATAGCTCCTTGATCAAGATGTACACAAAAGTCGGGTACTTGAA AGAAGCAGAGGAGACTTACAACCTGCTTCTTTCTTCAGACGATGGTCCTGACAGGTACTGTTCAAATTGTATGATAGATCTTTACTGCAGGCGAGCTATG GTGAAACAAGCGGAGGTGATATTTAAGAGGATGAAGAAGAAAGGGGAAGCAAACGAGTTTAGTTACGCGATGATGCTGTGCATGTACAAGAGACTGGGAA GATTCGAGGAAGCGAGTCAAGTTGCGGGAAAGATGAGGAATTTAGGAATCCTGAGCGAAGTGTTAAGCTACAACAATGTGATAGGATTGTATTCTTTGGA TGGAAGGTTTGCTGATGCTATCGGAACGTTTAAGGATATGTTGGGTGCTAAAGTTAAGCCGGACGAATTCACGTTCAAATCGCTAGGGATGGTGCTAGTG AAATGTGGAGTCTCGAAGCGGACTGTGAAGAGACTTGAATCCGCGGTGGAGAAGGATTATCAGAGTGGTTTGCAGGCTTGGCTAATTGCTCTCTGTACCA TTGTTGATGTAGACGACGACGACCATGCAAAAACAGTGTAA
AA sequence Show only first row Show all	>Lus10041172 pacid=23179813 polypeptide=Lus10041172 locus=Lus10041172.g ID=Lus10041172.BGIv1.0 annot-version=v1.0 MFAKLQLDSNCFPGVTSLSKSSSPTQGVSIPTKSGAKAIVKLREQRILQNSQGVAEKHNGDRRTKANQKPGIVFSPELEFPDRSRTTANRSGTRMGKNLG EELSRVEGNAYVCKEHTKCSTKWAFYGGSIPAILQALDTVKDLDEALHPWEHTLNNKVRSIILKEQLCWERALEIFEWFKNKRCYELNVIHYNIMLKILG KVKKWSLVESLCQEMAAKRISFINSTYGTLIDVYSKGGLKEKALWWLEKMNQQGIQPDEVTTGIVMQMYKKAGEFRKVEDFFKQWTSMDDGLREDYSVSS YTYNTLIDTYGKSGQIEEASKIFAQMLREGIVPTTVTFNTMIHICGNNGHLDEVTSLILKMEDLRCPLDTRTYNILISLYAKHDDIDLAAQYFRRMKEDR LEPDSVGYRTLLYAFSIRNMVSNAENLVSEMDEKGLKIDEYTQSALTRMYIDAGMLEKSWLWFRRFHLAGDMTSEGYAANIDAYGDRGHISEAERVFSCS KENGKLSVLEFNVMIKAYGFVKNYDKGCQLFDSIESHGCIPDKCSYGTLVQILASGDLPDKAQHYLKRMQEQGLVSVSDCLTYCVVISCFAKSGRLGMAK KVYEEMIGLDVKPDVQVYGILINASADAGNVVEAMEYMDAMKENGIRGNAIIYSSLIKMYTKVGYLKEAEETYNLLLSSDDGPDRYCSNCMIDLYCRRAM VKQAEVIFKRMKKKGEANEFSYAMMLCMYKRLGRFEEASQVAGKMRNLGILSEVLSYNNVIGLYSLDGRFADAIGTFKDMLGAKVKPDEFTFKSLGMVLV KCGVSKRTVKRLESAVEKDYQSGLQAWLIALCTIVDVDDDDHAKTV

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G23020			Tetratricopeptide repeat (TPR)...		Lus10041172 [exp]	0	1
AT3G52380		CP33, PDE322	PIGMENT DEFECTIVE 322, chlorop...		Lus10029372 [exp]	4.5	0.8603
AT4G33030		SQD1	sulfoquinovosyldiacylglycerol ...		Lus10013513 [exp]	10.1	0.8486
AT4G38160		PDE191	pigment defective 191, Mitocho...		Lus10026571 [exp]	13.2	0.8732
AT4G33030		SQD1	sulfoquinovosyldiacylglycerol ...		Lus10024985 [exp]	15.9	0.8685
AT1G11430			plastid developmental protein ...		Lus10007615 [exp]	22.8	0.8300
AT5G18570		EMB3138, ATOBGL...	EMBRYO DEFECTIVE 3138, EMBRYO ...		Lus10024297 [exp]	24.1	0.8672
					Lus10007473 [exp]	30.7	0.7541
AT4G01310			Ribosomal L5P family protein (...		Lus10036390 [exp]	31.5	0.8550
AT2G34640		HMR, PTAC12	HEMERA, plastid transcriptiona...		Lus10023283 [exp]	35.8	0.8376
AT4G37920			unknown protein		Lus10029560 [exp]	36.5	0.7876

Compare expression of checked genes

Lus10041172 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.