Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G14580 126 / 2e-34 CIPK4, SnRK3.3 SNF1-RELATED PROTEIN KINASE 3.3, CBL-interacting protein kinase 4 (.1) AT3G23000 119 / 6e-32 PKS7, ATSRPK1, ATSR2, CIPK7, SnRK3.10 SNF1-RELATED PROTEIN KINASE 3.10, CBL-interacting protein kinase 7 (.1) AT5G01810 92 / 4e-22 ATPK10, SnRK3.1, SIP2, PKS3, CIPK15 SNF1-RELATED PROTEIN KINASE 3.1, SOS3-INTERACTING PROTEIN 2, PROTEIN KINASE 10, CBL-interacting protein kinase 15 (.1.2.3) AT5G10930 84 / 7e-19 CIPK5, SnRK3.24 SNF1-RELATED PROTEIN KINASE 3.24, CBL-interacting protein kinase 5 (.1) AT1G01140 84 / 7e-19 PKS6, CIPK9, SnRK3.12 SNF1-RELATED PROTEIN KINASE 3.12, PROTEIN KINASE 6, CBL-interacting protein kinase 9 (.1.2.3) AT5G45820 82 / 2e-18 PKS18, CIPK20, SnRK3.6 SNF1-RELATED PROTEIN KINASE 3.6, PROTEIN KINASE 18, CBL-interacting protein kinase 20 (.1) AT4G30960 81 / 5e-18 CIPK6, SIP3, SnRK3.14, ATCIPK6 SNF1-RELATED PROTEIN KINASE 3.14, CBL-INTERACTING PROTEIN KINASE 6, SOS3-interacting protein 3 (.1) AT5G21326 80 / 1e-17 Ca2+regulated serine-threonine protein kinase family protein (.1) AT5G25110 79 / 5e-17 CIPK25, SnRK3.25 SNF1-RELATED PROTEIN KINASE 3.25, CBL-interacting protein kinase 25 (.1) AT1G48260 72 / 5e-15 CIPK17, SnRK3.21 SNF1-RELATED PROTEIN KINASE 3.21, CBL-interacting protein kinase 17 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10021892 [exp] 369 / 2e-128 AT3G23000 427 / 2e-147 SNF1-RELATED PROTEIN KINASE 3.10, CBL-interacting protein kinase 7 (.1) Lus10039404 [exp] 258 / 3e-86 AT3G23000 356 / 2e-121 SNF1-RELATED PROTEIN KINASE 3.10, CBL-interacting protein kinase 7 (.1) Lus10006640 [exp] 250 / 2e-82 AT3G23000 283 / 8e-92 SNF1-RELATED PROTEIN KINASE 3.10, CBL-interacting protein kinase 7 (.1) Lus10022749 [exp] 100 / 6e-25 AT5G58380 598 / 0.0 SNF1-RELATED PROTEIN KINASE 3.8, CBL-INTERACTING PROTEIN KINASE 10, SOS3-interacting protein 1 (.1) Lus10014163 [exp] 88 / 2e-20 AT5G58380 592 / 0.0 SNF1-RELATED PROTEIN KINASE 3.8, CBL-INTERACTING PROTEIN KINASE 10, SOS3-interacting protein 1 (.1) Lus10021852 [exp] 80 / 1e-17 AT4G30960 658 / 0.0 SNF1-RELATED PROTEIN KINASE 3.14, CBL-INTERACTING PROTEIN KINASE 6, SOS3-interacting protein 3 (.1) Lus10036280 [exp] 80 / 1e-17 AT4G30960 662 / 0.0 SNF1-RELATED PROTEIN KINASE 3.14, CBL-INTERACTING PROTEIN KINASE 6, SOS3-interacting protein 3 (.1) Lus10025245 [exp] 80 / 2e-17 AT5G01820 504 / 1e-177 SNF1-RELATED PROTEIN KINASE 3.15, SOS2-like protein kinase 24, CBL-INTERACTING PROTEIN KINASE 14, serine/threonine protein kinase 1 (.1) Lus10008582 [exp] 79 / 4e-17 AT5G58380 570 / 0.0 SNF1-RELATED PROTEIN KINASE 3.8, CBL-INTERACTING PROTEIN KINASE 10, SOS3-interacting protein 1 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G160200 [exp] 175 / 4e-53 AT3G23000 399 / 7e-137 SNF1-RELATED PROTEIN KINASE 3.10, CBL-interacting protein kinase 7 (.1) Potri.010G079000 [exp] 170 / 3e-51 AT3G23000 402 / 6e-138 SNF1-RELATED PROTEIN KINASE 3.10, CBL-interacting protein kinase 7 (.1) Potri.006G263500 [exp] 90 / 4e-21 AT5G25110 568 / 0.0 SNF1-RELATED PROTEIN KINASE 3.25, CBL-interacting protein kinase 25 (.1) Potri.006G186200 [exp] 85 / 2e-19 AT4G30960 649 / 0.0 SNF1-RELATED PROTEIN KINASE 3.14, CBL-INTERACTING PROTEIN KINASE 6, SOS3-interacting protein 3 (.1) Potri.003G181900 [exp] 83 / 1e-18 AT5G25110 460 / 2e-159 SNF1-RELATED PROTEIN KINASE 3.25, CBL-interacting protein kinase 25 (.1) Potri.013G156000 [exp] 83 / 1e-18 AT5G58380 623 / 0.0 SNF1-RELATED PROTEIN KINASE 3.8, CBL-INTERACTING PROTEIN KINASE 10, SOS3-interacting protein 1 (.1) Potri.018G019900 [exp] 83 / 1e-18 AT5G10930 576 / 0.0 SNF1-RELATED PROTEIN KINASE 3.24, CBL-interacting protein kinase 5 (.1) Potri.006G062800 [exp] 83 / 2e-18 AT1G30270 753 / 0.0 SNF1-RELATED PROTEIN KINASE 3.23, SOS2-like protein kinase 17, LOW-K+-SENSITIVE 1, CBL-interacting protein kinase 23 (.1) Potri.018G119200 [exp] 82 / 2e-18 AT1G30270 749 / 0.0 SNF1-RELATED PROTEIN KINASE 3.23, SOS2-like protein kinase 17, LOW-K+-SENSITIVE 1, CBL-interacting protein kinase 23 (.1) Potri.018G108500 [exp] 82 / 2e-18 AT4G30960 639 / 0.0 SNF1-RELATED PROTEIN KINASE 3.14, CBL-INTERACTING PROTEIN KINASE 6, SOS3-interacting protein 3 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0573 [flax] [poplar] KA1-like PF03822 [flax] [poplar] NAF NAF domain
Representative CDS sequence Show only first row Show all	>Lus10041173 pacid=23180015 polypeptide=Lus10041173 locus=Lus10041173.g ID=Lus10041173.BGIv1.0 annot-version=v1.0 ATGCATAGGAGGCAGTACGAAATCCCTAATTGGATTTCCAAGCCGGCGAAATCGGTTATCTACCAGTTACTCGATCCGGATCCGAAGACGAGAATGAGCA TCGAGACTGTAATGAACCACTCGTGGTTTCTGAACAAGTACCAAACGCCTTCTCAGACGAGCATATTGGAATGGGAGTATTATTCGAAATTCAACAACAT GGCGTCGACTTTCAATGCGTTCGATATAATCTCCATGTCATCGGGGTTGGATTTGTCAGGTTTATTCGAGACTGGTCTGAAGAAGGAGAAGAGGTTCACT TCGGCTGAGAGATTAGGGAGAGTTATGGAGAGGGTGAAGGAAGTTGGGAAAAAGCTTGATTACAGAGTTGAAGAAGGGAAAGGAGGAGGAGCTATTGGGT TGGAGAAAGGTCGGGTGGTTTTGCTCTTTGAGGCCATGGAAATTGCAGAGAAGATGGTTGTTGCTGAAGTTAGAGTTGCTAAAGGCTGTGGGATGGAGTT TGAGGATGTTCATTGGGCAGAGTTCAGGAATGGGCTTGGAGATGTGGTGCTCCATTGCCATGGCGGTGATCTCGCTTCTGCTCAGTGA
AA sequence Show only first row Show all	>Lus10041173 pacid=23180015 polypeptide=Lus10041173 locus=Lus10041173.g ID=Lus10041173.BGIv1.0 annot-version=v1.0 MHRRQYEIPNWISKPAKSVIYQLLDPDPKTRMSIETVMNHSWFLNKYQTPSQTSILEWEYYSKFNNMASTFNAFDIISMSSGLDLSGLFETGLKKEKRFT SAERLGRVMERVKEVGKKLDYRVEEGKGGGAIGLEKGRVVLLFEAMEIAEKMVVAEVRVAKGCGMEFEDVHWAEFRNGLGDVVLHCHGGDLASAQ

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G14580		CIPK4, SnRK3.3	SNF1-RELATED PROTEIN KINASE 3....		Lus10041173 [exp]	0	1
AT1G28280			VQ motif-containing protein (....		Lus10041929 [exp]	4.9	0.8957
AT5G03170		ATFLA11, FLA11,...	ARABIDOPSIS FASCICLIN-LIKE ARA...		Lus10036114 [exp]	6.9	0.8627
AT3G45230			hydroxyproline-rich glycoprote...		Lus10022582 [exp]	7.1	0.8717
AT3G60690			SAUR-like auxin-responsive pro...		Lus10009286 [exp]	14.3	0.8610
AT5G03170		ATFLA11, FLA11,...	ARABIDOPSIS FASCICLIN-LIKE ARA...		Lus10036112 [exp]	15.5	0.8551
AT1G49230			RING/U-box superfamily protein...		Lus10005818 [exp]	19.1	0.8518
AT3G60690			SAUR-like auxin-responsive pro...		Lus10015879 [exp]	20.5	0.8469
AT3G45230			hydroxyproline-rich glycoprote...		Lus10021479 [exp]	21.3	0.8192
AT1G02820			Late embryogenesis abundant 3 ...		Lus10027986 [exp]	26.4	0.8070
AT3G18590		AtENODL5	early nodulin-like protein 5 (...		Lus10022522 [exp]	28.9	0.7825

Compare expression of checked genes

Lus10041173 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.