Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G43830 366 / 3e-129 Aluminium induced protein with YGL and LRDR motifs (.1) AT3G22850 361 / 1e-127 Aluminium induced protein with YGL and LRDR motifs (.1) AT3G15450 226 / 6e-74 Aluminium induced protein with YGL and LRDR motifs (.1.2.3) AT4G27450 225 / 9e-74 Aluminium induced protein with YGL and LRDR motifs (.1) AT5G19140 211 / 1e-68 AtAILP1, AILP1 Aluminium induced protein with YGL and LRDR motifs (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10006624 [exp] 459 / 3e-166 AT5G43830 374 / 2e-132 Aluminium induced protein with YGL and LRDR motifs (.1) Lus10039382 [exp] 458 / 8e-166 AT5G43830 372 / 6e-132 Aluminium induced protein with YGL and LRDR motifs (.1) Lus10033418 [exp] 226 / 4e-74 AT4G27450 369 / 2e-130 Aluminium induced protein with YGL and LRDR motifs (.1) Lus10034883 [exp] 221 / 6e-72 AT4G27450 365 / 6e-129 Aluminium induced protein with YGL and LRDR motifs (.1) Lus10018484 [exp] 209 / 2e-67 AT4G27450 305 / 3e-105 Aluminium induced protein with YGL and LRDR motifs (.1) Lus10034038 [exp] 207 / 7e-67 AT5G19140 389 / 3e-139 Aluminium induced protein with YGL and LRDR motifs (.1.2) Lus10010505 [exp] 205 / 3e-66 AT5G19140 392 / 4e-140 Aluminium induced protein with YGL and LRDR motifs (.1.2) Lus10011191 [exp] 199 / 2e-63 AT4G27450 303 / 2e-104 Aluminium induced protein with YGL and LRDR motifs (.1) Lus10021899 [exp] 166 / 1e-46 AT1G04210 609 / 0.0 Leucine-rich repeat protein kinase family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G081600 [exp] 420 / 8e-151 AT5G43830 391 / 3e-139 Aluminium induced protein with YGL and LRDR motifs (.1) Potri.008G158400 [exp] 417 / 1e-149 AT5G43830 388 / 3e-138 Aluminium induced protein with YGL and LRDR motifs (.1) Potri.011G122100 [exp] 231 / 3e-76 AT4G27450 428 / 7e-154 Aluminium induced protein with YGL and LRDR motifs (.1) Potri.001G403000 [exp] 225 / 7e-74 AT4G27450 436 / 3e-157 Aluminium induced protein with YGL and LRDR motifs (.1) Potri.004G040600 [exp] 221 / 5e-72 AT4G27450 366 / 2e-129 Aluminium induced protein with YGL and LRDR motifs (.1) Potri.011G049900 [exp] 214 / 1e-69 AT4G27450 383 / 6e-136 Aluminium induced protein with YGL and LRDR motifs (.1) Potri.008G203400 [exp] 206 / 2e-66 AT5G19140 397 / 4e-142 Aluminium induced protein with YGL and LRDR motifs (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0052 [flax] [poplar] NTN PF12481 [flax] [poplar] DUF3700 Aluminium induced protein
Representative CDS sequence Show only first row Show all	>Lus10041181 pacid=23179918 polypeptide=Lus10041181 locus=Lus10041181.g ID=Lus10041181.BGIv1.0 annot-version=v1.0 ATGCTGGCCGTGTTTGACAAGAACGTCGCCAAGTGCCCGCAGGAGCTCCAAAGCCCGGCCGCCGGGAGTTCATCCTCCTCCCTCAAAGATGGGTTCTTGG CCAAGCATTTCGAGTCCCTTCATCCTTCTCCCGTCCTCGTCAATCTGGGTTCTTCTGGGTTGATCGCTTATTCTCTTCACAAGCAAAACCCTCTCGTCCC TAGATTGTTTGCGGTTGTGGATGATATGTTCTGCTTGTTCCAAGGCCACATTGAGAATGTAGCAGTACTTAAGCAGCAGTATGGGTTGAACAAAGCTGCA AATGAGGTTATAATCGTCATTGAAGCGTACAGAACACTCAGAGACCGTGGTCCCTATCCTCCCGATCAAGTCATCAGAGACATCAAGGGCAAATTTGCTT TCTTGCTATATGATAGCGCTTCTAAAGTCACACTCTTTGCTTCGGATGCTGATGGGAGTGTTCCCTTCTTCTGGGGAACTGATTCTGACGGCCAGCTTGT TCTATCGGATGATACTGAAGTTATTCAAAAGGGATGTGGGAAATCTTATGCGCCATTCCCCAAAGGATGCTTCTTTACCACAAGTGGAGGGTTGAGGAGC TTCGAACACCCTATGAATGAGTTGAAGCCAATTCCAAGAGTTGACAGCTCCGGCCAAGTGTATGGCTCAGATTTCAAGGTGGACACAGATGCTAAGAAGG AGGGCGGCAGTATGCCTAGAGTTGGAAGTTCTTACAACTGGTCTGAAAACTATTGA
AA sequence Show only first row Show all	>Lus10041181 pacid=23179918 polypeptide=Lus10041181 locus=Lus10041181.g ID=Lus10041181.BGIv1.0 annot-version=v1.0 MLAVFDKNVAKCPQELQSPAAGSSSSSLKDGFLAKHFESLHPSPVLVNLGSSGLIAYSLHKQNPLVPRLFAVVDDMFCLFQGHIENVAVLKQQYGLNKAA NEVIIVIEAYRTLRDRGPYPPDQVIRDIKGKFAFLLYDSASKVTLFASDADGSVPFFWGTDSDGQLVLSDDTEVIQKGCGKSYAPFPKGCFFTTSGGLRS FEHPMNELKPIPRVDSSGQVYGSDFKVDTDAKKEGGSMPRVGSSYNWSENY

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G43830			Aluminium induced protein with...		Lus10041181 [exp]	0	1
AT4G04750			Major facilitator superfamily ...		Lus10029965 [exp]	4.4	0.8290
AT5G58070		ATTIL	temperature-induced lipocalin ...		Lus10019048 [exp]	9.9	0.8149
AT2G14110			Haloacid dehalogenase-like hyd...		Lus10007071 [exp]	11.0	0.7732
AT4G14500			Polyketide cyclase/dehydrase a...		Lus10021883 [exp]	12.5	0.8002
AT2G20300		ALE2	Abnormal Leaf Shape 2, Protein...		Lus10003827 [exp]	16.1	0.7664
AT2G39000			Acyl-CoA N-acyltransferases (N...		Lus10009229 [exp]	21.0	0.8161
AT3G07360		ATPUB9	ARABIDOPSIS THALIANA PLANT U-B...		Lus10009594 [exp]	21.4	0.7759
AT3G47600	MYB	ATMYB94, AtMYBC...	myb domain protein 94 (.1)		Lus10005245 [exp]	26.3	0.7569
					Lus10009395 [exp]	28.0	0.7392
AT3G52070			unknown protein		Lus10029504 [exp]	29.2	0.7874

Compare expression of checked genes

Lus10041181 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.