Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G60680 355 / 5e-122 AGD2 NAD(P)-linked oxidoreductase superfamily protein (.1) AT1G60690 355 / 6e-122 NAD(P)-linked oxidoreductase superfamily protein (.1) AT1G60750 346 / 7e-119 NAD(P)-linked oxidoreductase superfamily protein (.1) AT1G60710 346 / 1e-118 ATB2 NAD(P)-linked oxidoreductase superfamily protein (.1) AT1G60730 345 / 6e-118 NAD(P)-linked oxidoreductase superfamily protein (.1), NAD(P)-linked oxidoreductase superfamily protein (.2), NAD(P)-linked oxidoreductase superfamily protein (.3) AT1G10810 342 / 4e-117 NAD(P)-linked oxidoreductase superfamily protein (.1) AT1G04690 117 / 6e-30 KV-BETA1, KAB1 potassium channel beta subunit 1 (.1) AT5G53580 103 / 6e-25 AtPLR1 pyridoxal reductase 1, NAD(P)-linked oxidoreductase superfamily protein (.1) AT1G06690 102 / 2e-24 NAD(P)-linked oxidoreductase superfamily protein (.1) AT1G04420 92 / 1e-20 NAD(P)-linked oxidoreductase superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10041185 [exp] 489 / 4e-175 AT1G60750 384 / 2e-133 NAD(P)-linked oxidoreductase superfamily protein (.1) Lus10029615 [exp] 473 / 1e-168 AT1G60710 399 / 2e-139 NAD(P)-linked oxidoreductase superfamily protein (.1) Lus10006105 [exp] 358 / 5e-123 AT1G60690 554 / 0.0 NAD(P)-linked oxidoreductase superfamily protein (.1) Lus10037437 [exp] 349 / 9e-120 AT1G60690 571 / 0.0 NAD(P)-linked oxidoreductase superfamily protein (.1) Lus10041272 [exp] 348 / 2e-119 AT1G60710 571 / 0.0 NAD(P)-linked oxidoreductase superfamily protein (.1) Lus10023701 [exp] 346 / 3e-118 AT1G60690 527 / 0.0 NAD(P)-linked oxidoreductase superfamily protein (.1) Lus10041303 [exp] 282 / 4e-94 AT1G60690 419 / 1e-148 NAD(P)-linked oxidoreductase superfamily protein (.1) Lus10037408 [exp] 220 / 5e-70 AT1G60730 311 / 6e-106 NAD(P)-linked oxidoreductase superfamily protein (.1), NAD(P)-linked oxidoreductase superfamily protein (.2), NAD(P)-linked oxidoreductase superfamily protein (.3) Lus10010566 [exp] 164 / 3e-50 AT1G10810 198 / 3e-64 NAD(P)-linked oxidoreductase superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G158300 [exp] 501 / 6e-180 AT1G60680 389 / 2e-135 NAD(P)-linked oxidoreductase superfamily protein (.1) Potri.013G040000 [exp] 437 / 2e-154 AT1G60710 376 / 2e-130 NAD(P)-linked oxidoreductase superfamily protein (.1) Potri.013G040100 [exp] 428 / 7e-151 AT1G60710 369 / 1e-127 NAD(P)-linked oxidoreductase superfamily protein (.1) Potri.005G052400 [exp] 417 / 2e-146 AT1G60680 395 / 1e-137 NAD(P)-linked oxidoreductase superfamily protein (.1) Potri.002G234000 [exp] 352 / 7e-121 AT1G60690 524 / 0.0 NAD(P)-linked oxidoreductase superfamily protein (.1) Potri.014G147700 [exp] 347 / 9e-119 AT1G60710 559 / 0.0 NAD(P)-linked oxidoreductase superfamily protein (.1) Potri.002G234201 [exp] 340 / 2e-116 AT1G60710 547 / 0.0 NAD(P)-linked oxidoreductase superfamily protein (.1) Potri.001G052100 [exp] 118 / 2e-30 AT1G04690 602 / 0.0 potassium channel beta subunit 1 (.1) Potri.008G167400 [exp] 109 / 1e-26 AT1G04420 612 / 0.0 NAD(P)-linked oxidoreductase superfamily protein (.1) Potri.015G006900 [exp] 104 / 3e-25 AT5G53580 556 / 0.0 pyridoxal reductase 1, NAD(P)-linked oxidoreductase superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00248 [flax] [poplar] Aldo_ket_red Aldo/keto reductase family
Representative CDS sequence Show only first row Show all	>Lus10041184 pacid=23179590 polypeptide=Lus10041184 locus=Lus10041184.g ID=Lus10041184.BGIv1.0 annot-version=v1.0 ATGGATAGCGACCATCAAAACATCAAGATTCCAACGGTGAAACTGGGCAGTCAAGGATTGGAGGTATCTAGATTAGGATTAGGATGCGCAGGACTTTCTG GGTTGCTCAACGAGCCTCTTTCCCACGAAGATGGATGCTTACTTCTGAAGAACGCGTTCCATAGAGGCGTTACCTTCTTTGATACATCAGATGCATATGG AAGAAATCATCATAATGAAATTATGATCGGGAAGGCTTTGAAGGAGCTCCCCAGAGAAAAAGTGCAGTTGGCAACCAAGTTTGGAATACTTGTGACAGGG GATTTTCAGTTTGAGATAAAGGGTAGTCCTGAATACGTGCGTGAATGCTGTGAAGCTAGCCTTAAGTGTCTTGGAGTCGACTATATTGATCTGTATTACC AGCACCGTGTTGATACTTCTGTGCCGATCGAGGATACTATGGAGGAGCTTAAGAAGTTGGTGAATGAGGGGAAGGTGAAGTACATTGGGTTATCAGAAGC AAGTCCAGACACAATCAGGAGAGCTCATGCTGTTCATCCCATTACCGCCTTACAGATGGAATACTCTTTATGGAGCAGGGAGATTGAACAAGAGATTATT CCTCTCTGCCGCGAGCTTGGTATTGGGATAGTGGCTTATAGTCCTCTAGGCCATGGCTTCTTTGCTGGCAAAGCAGTTGTGGAGAGCCTTCCCAGTGGGA GTCTATTGGCAGGACATCCAAGGTTCATGGGTGACAGTTTAGAGAAGAACAAGGCTTTATATGCAAGAGTTGCTGATTTGGCGATAAAGCATCGTTGTAC CGCTTCTCAACTAGCTATTTCGTGGGTTCTGCATCAGGGAAATGACATAATCCCAATCCCCGGAACATCAAAATTGAAGAATCTTGACCACAACATTGAG AGTTTGCTTGTGAAGCTTACGCCGCAGGATGTGAAGGAAATTTCCGACGCAGTGCAGATTGAAGAAGTTAATGGATCAAGAGAGGTGCCTGTCATTGCTA AATTTAGTTGGCAGTTCGCAGATACACCGCCAAAGAAGTGA
AA sequence Show only first row Show all	>Lus10041184 pacid=23179590 polypeptide=Lus10041184 locus=Lus10041184.g ID=Lus10041184.BGIv1.0 annot-version=v1.0 MDSDHQNIKIPTVKLGSQGLEVSRLGLGCAGLSGLLNEPLSHEDGCLLLKNAFHRGVTFFDTSDAYGRNHHNEIMIGKALKELPREKVQLATKFGILVTG DFQFEIKGSPEYVRECCEASLKCLGVDYIDLYYQHRVDTSVPIEDTMEELKKLVNEGKVKYIGLSEASPDTIRRAHAVHPITALQMEYSLWSREIEQEII PLCRELGIGIVAYSPLGHGFFAGKAVVESLPSGSLLAGHPRFMGDSLEKNKALYARVADLAIKHRCTASQLAISWVLHQGNDIIPIPGTSKLKNLDHNIE SLLVKLTPQDVKEISDAVQIEEVNGSREVPVIAKFSWQFADTPPKK

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G60690			NAD(P)-linked oxidoreductase s...		Lus10041184 [exp]	0	1
AT4G17890		UBP20, AGD8	ARF-GAP domain 8 (.1.2)		Lus10004125 [exp]	2.4	0.9246
AT3G51880		AtHMGB1, NFD1, ...	NUCLEOSOME/CHROMATIN ASSEMBLY ...		Lus10035511 [exp]	2.4	0.9343
AT3G28050			nodulin MtN21 /EamA-like trans...		Lus10039425 [exp]	12.6	0.9031
AT1G02610			RING/FYVE/PHD zinc finger supe...		Lus10025031 [exp]	12.9	0.8806
AT1G07570		APK1A	Protein kinase superfamily pro...		Lus10000954 [exp]	13.0	0.8991
AT4G27120			unknown protein		Lus10011161 [exp]	13.0	0.9144
AT5G43290	WRKY	ATWRKY49, WRKY4...	ARABIDOPSIS THALIANA WRKY DNA-...		Lus10010851 [exp]	13.2	0.8957
AT1G07745		SSN1, ATRAD51D,...	SUPPRESOR OF SNI1, homolog of ...		Lus10015220 [exp]	13.4	0.9077
AT4G32440			Plant Tudor-like RNA-binding p...		Lus10018749 [exp]	13.6	0.9108
AT5G35180			Protein of unknown function (D...		Lus10019585 [exp]	15.5	0.8811

Compare expression of checked genes

Lus10041184 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.