Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G60750 383 / 2e-133 NAD(P)-linked oxidoreductase superfamily protein (.1) AT1G60710 381 / 3e-132 ATB2 NAD(P)-linked oxidoreductase superfamily protein (.1) AT1G60680 378 / 4e-131 AGD2 NAD(P)-linked oxidoreductase superfamily protein (.1) AT1G60690 373 / 2e-129 NAD(P)-linked oxidoreductase superfamily protein (.1) AT1G60730 372 / 8e-129 NAD(P)-linked oxidoreductase superfamily protein (.1), NAD(P)-linked oxidoreductase superfamily protein (.2), NAD(P)-linked oxidoreductase superfamily protein (.3) AT1G10810 361 / 2e-124 NAD(P)-linked oxidoreductase superfamily protein (.1) AT1G06690 118 / 5e-30 NAD(P)-linked oxidoreductase superfamily protein (.1) AT1G04690 109 / 4e-27 KV-BETA1, KAB1 potassium channel beta subunit 1 (.1) AT5G53580 108 / 1e-26 AtPLR1 pyridoxal reductase 1, NAD(P)-linked oxidoreductase superfamily protein (.1) AT4G33670 99 / 1e-23 NAD(P)-linked oxidoreductase superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10041184 [exp] 513 / 0 AT1G60690 374 / 1e-129 NAD(P)-linked oxidoreductase superfamily protein (.1) Lus10029615 [exp] 473 / 2e-168 AT1G60710 399 / 2e-139 NAD(P)-linked oxidoreductase superfamily protein (.1) Lus10006105 [exp] 390 / 5e-136 AT1G60690 554 / 0.0 NAD(P)-linked oxidoreductase superfamily protein (.1) Lus10037437 [exp] 380 / 4e-132 AT1G60690 571 / 0.0 NAD(P)-linked oxidoreductase superfamily protein (.1) Lus10041272 [exp] 379 / 1e-131 AT1G60710 571 / 0.0 NAD(P)-linked oxidoreductase superfamily protein (.1) Lus10023701 [exp] 357 / 1e-122 AT1G60690 527 / 0.0 NAD(P)-linked oxidoreductase superfamily protein (.1) Lus10041303 [exp] 286 / 7e-96 AT1G60690 419 / 1e-148 NAD(P)-linked oxidoreductase superfamily protein (.1) Lus10037408 [exp] 221 / 1e-70 AT1G60730 311 / 6e-106 NAD(P)-linked oxidoreductase superfamily protein (.1), NAD(P)-linked oxidoreductase superfamily protein (.2), NAD(P)-linked oxidoreductase superfamily protein (.3) Lus10010566 [exp] 167 / 2e-51 AT1G10810 198 / 3e-64 NAD(P)-linked oxidoreductase superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G158300 [exp] 554 / 0 AT1G60680 389 / 2e-135 NAD(P)-linked oxidoreductase superfamily protein (.1) Potri.013G040000 [exp] 473 / 2e-168 AT1G60710 376 / 2e-130 NAD(P)-linked oxidoreductase superfamily protein (.1) Potri.013G040100 [exp] 465 / 2e-165 AT1G60710 369 / 1e-127 NAD(P)-linked oxidoreductase superfamily protein (.1) Potri.005G052400 [exp] 451 / 9e-160 AT1G60680 395 / 1e-137 NAD(P)-linked oxidoreductase superfamily protein (.1) Potri.014G147700 [exp] 377 / 1e-130 AT1G60710 559 / 0.0 NAD(P)-linked oxidoreductase superfamily protein (.1) Potri.002G234201 [exp] 375 / 3e-130 AT1G60710 547 / 0.0 NAD(P)-linked oxidoreductase superfamily protein (.1) Potri.002G234000 [exp] 371 / 2e-128 AT1G60690 524 / 0.0 NAD(P)-linked oxidoreductase superfamily protein (.1) Potri.002G055500 [exp] 125 / 1e-32 AT1G06690 557 / 0.0 NAD(P)-linked oxidoreductase superfamily protein (.1) Potri.005G207000 [exp] 124 / 3e-32 AT1G06690 589 / 0.0 NAD(P)-linked oxidoreductase superfamily protein (.1) Potri.005G207100 [exp] 123 / 4e-32 AT1G06690 526 / 0.0 NAD(P)-linked oxidoreductase superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00248 [flax] [poplar] Aldo_ket_red Aldo/keto reductase family
Representative CDS sequence Show only first row Show all	>Lus10041185 pacid=23179929 polypeptide=Lus10041185 locus=Lus10041185.g ID=Lus10041185.BGIv1.0 annot-version=v1.0 ATGGAGGAAATTTCCAGTCTTCAGATCCCAAAAGTGAAGCTGGGAAGTCAGGGATTCGAGGTTTCCAGATTAGGATTTGGGTGTGGAGGTCTCTCCGGAA TTTACAACGCCCCTCTCTCCCATGAAGCTGGATGTGACGTCATCAAGTACGCCTTCTCAAAGGGCATCACCTTCTTCAACACGTCAGATTTGTATGGCGA TGATCATCACAACGAGATCATGATCGGCAAGGCCTTGAAGCTGCTACCTAGAGAGAAGGTTCAGTTAGCAACGAAATTTGGAATAACAAGCTCAGGGGAT CTGCAATTTACTGTGAGAGGCACTCCTGAGTATGTGAGGCAATGTTGTGAAGCTTCTCTCAAGAGACTTGATCTGGATTACATCGACTTATATCTCCAGC ACCGCGTCGATACTTCAGTGCCCATTGAGGATACGATTGAGGAGCTAAAGAAATTGGTTCAAGAAGGGAAGATAAAGTACATTGGATTGTCTGAAGCTAG TCCAGATACCATAAGGAGAGCGCATGCAGTACACCCCATTACTGCTGTAGAAATGGAGTACTCTCTGTGGGCTACTGACATTGAAGAAGACATAATTCCT GTTTGCAGGGAGCTTGGGATAGGGCTAGTGGCGTATAGCCCACTTGGTCGAGGGTTCTTTGCTGGGAAAGGAGTTGTGGAGAGTTTGCCAACTGGTAGCC TTTTGGAGATACATCCAAGGTTTGGAGGGGAGAATTTAGAGAAGAATAAGGTGATATACAATAACTTAACTGAGTTGGCTGCAAAGCATTCTTGTACTCC ATCTCAGCTGGCTTTGGCGTGGCTTCTTCACCAGGGAGATGACATTGTGCCAATTCCTGGGACTACTAAGACCAAGAATCTGGAGAACAATATTGGGTCA TTGGCAGTAAAGCTTACAGGAGAGGATTTGAAAGAGGTCGGTGAAGTTGTGGGAATTGATAAAGTTGCAGGTGAGAGAGAGTATGATATGTTCTCTGGTT TCCTGTACAAGTTAGCAAACACCCCTCCAAAATAA
AA sequence Show only first row Show all	>Lus10041185 pacid=23179929 polypeptide=Lus10041185 locus=Lus10041185.g ID=Lus10041185.BGIv1.0 annot-version=v1.0 MEEISSLQIPKVKLGSQGFEVSRLGFGCGGLSGIYNAPLSHEAGCDVIKYAFSKGITFFNTSDLYGDDHHNEIMIGKALKLLPREKVQLATKFGITSSGD LQFTVRGTPEYVRQCCEASLKRLDLDYIDLYLQHRVDTSVPIEDTIEELKKLVQEGKIKYIGLSEASPDTIRRAHAVHPITAVEMEYSLWATDIEEDIIP VCRELGIGLVAYSPLGRGFFAGKGVVESLPTGSLLEIHPRFGGENLEKNKVIYNNLTELAAKHSCTPSQLALAWLLHQGDDIVPIPGTTKTKNLENNIGS LAVKLTGEDLKEVGEVVGIDKVAGEREYDMFSGFLYKLANTPPK

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G60750			NAD(P)-linked oxidoreductase s...		Lus10041185 [exp]	0	1
AT1G31940			unknown protein		Lus10010425 [exp]	1.0	0.8882
AT1G62990	HD	IXR11, KNAT7	KNOTTED-like homeobox of Arabi...		Lus10024485 [exp]	4.9	0.8220
AT2G20230			Tetraspanin family protein (.1...		Lus10011910 [exp]	7.9	0.7930
AT1G66230	MYB	ATMYB20	myb domain protein 20 (.1)		Lus10027197 [exp]	8.2	0.8327
AT1G56230			Protein of unknown function (D...		Lus10029871 [exp]	9.7	0.8002
AT5G05760		ATSYP31, ATSED5...	T-SNARE SED 5, syntaxin of pla...		Lus10028277 [exp]	10.6	0.7935
AT5G03530		ATRABALPHA, AtR...	ARABIDOPSIS THALIANA RAB GTPAS...		Lus10040423 [exp]	13.9	0.7582
AT1G22170			Phosphoglycerate mutase family...		Lus10033465 [exp]	15.2	0.7968
AT1G62990	HD	IXR11, KNAT7	KNOTTED-like homeobox of Arabi...		Lus10001195 [exp]	16.1	0.7908
AT1G74740		CDPK1A, CPK30, ...	CALCIUM-DEPENDENT PROTEIN KINA...		Lus10008631 [exp]	19.1	0.7879

Compare expression of checked genes

Lus10041185 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.