Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G14740 235 / 1e-72 Plant protein of unknown function (DUF828) with plant pleckstrin homology-like region AT3G22810 228 / 4e-70 Plant protein of unknown function (DUF828) with plant pleckstrin homology-like region (.1) AT5G43870 167 / 6e-47 Plant protein of unknown function (DUF828) with plant pleckstrin homology-like region (.1) AT3G63300 153 / 2e-41 FKD1 FORKED 1 (.1.2) AT4G32785 87 / 1e-20 unknown protein AT5G47440 79 / 7e-16 Plant protein of unknown function (DUF828) with plant pleckstrin homology-like region (.1) AT4G17350 77 / 4e-15 Plant protein of unknown function (DUF828) with plant pleckstrin homology-like region (.1) AT4G16670 70 / 9e-13 Plant protein of unknown function (DUF828) with plant pleckstrin homology-like region (.1) AT4G32780 45 / 5e-05 phosphoinositide binding (.1) AT5G57770 44 / 0.0002 Plant protein of unknown function (DUF828) with plant pleckstrin homology-like region (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10006614 [exp] 243 / 7e-76 AT4G14740 504 / 5e-177 Plant protein of unknown function (DUF828) with plant pleckstrin homology-like region Lus10021903 [exp] 208 / 1e-64 AT5G43870 159 / 8e-47 Plant protein of unknown function (DUF828) with plant pleckstrin homology-like region (.1) Lus10039370 [exp] 209 / 2e-64 AT4G14740 219 / 2e-69 Plant protein of unknown function (DUF828) with plant pleckstrin homology-like region Lus10014703 [exp] 154 / 3e-44 AT3G22810 297 / 2e-99 Plant protein of unknown function (DUF828) with plant pleckstrin homology-like region (.1) Lus10009509 [exp] 97 / 3e-23 AT3G22810 180 / 2e-55 Plant protein of unknown function (DUF828) with plant pleckstrin homology-like region (.1) Lus10004079 [exp] 94 / 4e-18 AT3G63300 167 / 2e-47 FORKED 1 (.1.2) Lus10004734 [exp] 73 / 8e-14 AT4G17350 389 / 2e-133 Plant protein of unknown function (DUF828) with plant pleckstrin homology-like region (.1) Lus10014704 [exp] 65 / 4e-12 AT3G63300 143 / 9e-41 FORKED 1 (.1.2) Lus10007797 [exp] 44 / 0.0001 AT4G16670 203 / 1e-62 Plant protein of unknown function (DUF828) with plant pleckstrin homology-like region (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G157000 [exp] 248 / 8e-78 AT3G22810 430 / 9e-148 Plant protein of unknown function (DUF828) with plant pleckstrin homology-like region (.1) Potri.010G082400 [exp] 237 / 2e-73 AT4G14740 468 / 1e-162 Plant protein of unknown function (DUF828) with plant pleckstrin homology-like region Potri.005G213800 [exp] 170 / 7e-48 AT3G63300 388 / 7e-131 FORKED 1 (.1.2) Potri.002G049200 [exp] 168 / 3e-47 AT3G63300 418 / 1e-142 FORKED 1 (.1.2) Potri.018G042000 [exp] 93 / 1e-20 AT4G32785 159 / 1e-47 unknown protein Potri.003G077900 [exp] 86 / 3e-18 AT4G17350 356 / 4e-121 Plant protein of unknown function (DUF828) with plant pleckstrin homology-like region (.1) Potri.001G156700 [exp] 74 / 3e-14 AT4G17350 348 / 8e-118 Plant protein of unknown function (DUF828) with plant pleckstrin homology-like region (.1) Potri.018G099000 [exp] 43 / 0.0003 AT5G57770 338 / 7e-114 Plant protein of unknown function (DUF828) with plant pleckstrin homology-like region (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF05703 [flax] [poplar] Auxin_canalis Auxin canalisation CL0266 [flax] [poplar] PH PF08458 [flax] [poplar] PH_2 Plant pleckstrin homology-like region
Representative CDS sequence Show only first row Show all	>Lus10041187 pacid=23179736 polypeptide=Lus10041187 locus=Lus10041187.g ID=Lus10041187.BGIv1.0 annot-version=v1.0 ATGGACAAGTCCTTAACCGAAACGTGGCGACCCGAACCGACATTCTTCTTCCGGCCGCCGGAGACCCCTCGCGAGCCGATGGAGTTCCTCTCACGATCAT GGAGCGTCTCTGCTTTTGAAGTCTCCAAGGCCCTGGGCCCACCACCACCTCCTCCTCAAATGATCCTCACTTCCGGCGGCGACGGCGCCATTCAGGAAGA CATCATCGCTGAGCTGGATGACGGCGGCTCCGCCCCCTTCAACCCCAACCCTACTTTCTCCTTCGCCTCCTCCGAGACTTCCCAGATGGTCATGGACCGT ATTTTGTCTCACTCGCAAGACGTGTCACCAAGAACTTCAGGCAGGCTCTCCCATAGCAGCGGTCCTCTCAATGGTTCCTTAACCGACAGCCCTCCCGTTT CTCCATCTGATCTCGAGGATCTCAAGGGCTGCCGCCCCAGCAACAACAACAACTTCCATTACAACCTCCAGACCACCCAGTTCCGTATGGCCTCCGGCAC GCAACGTGGCGGCGCCATGATCCCCGGCGGCGGAGGCGGGAAGACGGTTGGGAGGTGGTTAAAGGATAGGAAGGAGAAGAAGAAGGAAGAGACGAGGGCC CACAACGCTCAAGTCCACGCTGCCATCTCCGTCGCCGGAGTCGCTGCCGCGATCGCGGCTATAGCAGCTGCCACAGCGGCTTCTTCAGGGTCCGCCGGTA GTAAGGACGAGCAGCACGCCCGGACTGACATGGCGATGGCGTCAGCGGCGACCCTTGTAGCCGCTCAGTGCGTGGAGGCTGCAGAGGCTATGGGGGCAGA GCGGGAGCACCTTGCCTCCATCATCAGCTCCGCCGTCAATGTCAGGTCTCCCGGGGATATCATGACCCTTACCGCCGCCGCAGCCACGTGGGAGCTGCAC TGGAAGATTGTATCTGTTTATATCAACAGGATGAATCAGGTTATGTTGAAGATGAAGAGCAGACATGTTGCTGGGACCATAACCAAAAAGAAAAAGAATC TGGTGCTGGATGTGATCAAGAATGTTCCGGCATGGCCGGGGCGTCATTTGCTGGAAGGCGGAGAGAATCGGAGGTATTTCGGGTTGAAGACTGTGTTAAG AGGGGAGGTTGAGTTTGAGTGCATGAGTCAGAAGGAATATGATCTCTGGACTGAAGGTGTGTCCAGACTTCTAGCCATCGCTGGAGAAAAGAGGAGCAAT AGACCCTATAAGAATTGA
AA sequence Show only first row Show all	>Lus10041187 pacid=23179736 polypeptide=Lus10041187 locus=Lus10041187.g ID=Lus10041187.BGIv1.0 annot-version=v1.0 MDKSLTETWRPEPTFFFRPPETPREPMEFLSRSWSVSAFEVSKALGPPPPPPQMILTSGGDGAIQEDIIAELDDGGSAPFNPNPTFSFASSETSQMVMDR ILSHSQDVSPRTSGRLSHSSGPLNGSLTDSPPVSPSDLEDLKGCRPSNNNNFHYNLQTTQFRMASGTQRGGAMIPGGGGGKTVGRWLKDRKEKKKEETRA HNAQVHAAISVAGVAAAIAAIAAATAASSGSAGSKDEQHARTDMAMASAATLVAAQCVEAAEAMGAEREHLASIISSAVNVRSPGDIMTLTAAAATWELH WKIVSVYINRMNQVMLKMKSRHVAGTITKKKKNLVLDVIKNVPAWPGRHLLEGGENRRYFGLKTVLRGEVEFECMSQKEYDLWTEGVSRLLAIAGEKRSN RPYKN

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G14740			Plant protein of unknown funct...		Lus10041187 [exp]	0	1
AT2G38120		MAP1, WAV5, PIR...	WAVY ROOTS 5, MODIFIER OF ARF7...		Lus10040212 [exp]	3.7	0.9453
AT1G29300		UNE1	unfertilized embryo sac 1, Pla...		Lus10029259 [exp]	4.6	0.9216
AT4G10430			TMPIT-like protein (.1.2.3)		Lus10010151 [exp]	6.6	0.9110
AT3G16920		ATCTL2	chitinase-like protein 2 (.1)		Lus10037737 [exp]	7.9	0.9469
AT3G15480			Protein of unknown function (D...		Lus10043091 [exp]	8.1	0.9363
AT5G17850			Sodium/calcium exchanger famil...		Lus10005673 [exp]	9.6	0.9212
AT5G10930		CIPK5, SnRK3.24	SNF1-RELATED PROTEIN KINASE 3....		Lus10041653 [exp]	9.9	0.9315
AT4G16820		PLA-I{beta]2	phospholipase A I beta 2, alph...		Lus10004364 [exp]	10.9	0.9231
AT5G23100			Protein of unknown function, D...		Lus10009615 [exp]	13.8	0.9131
AT1G08290	C2H2ZnF	WIP3	WIP domain protein 3 (.1)		Lus10004887 [exp]	13.9	0.9377

Compare expression of checked genes

Lus10041187 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.